Tools > Pairwise Sequence Alignment > EMBOSS Matcher
We will update NCBI Blast to version 2.7.1+ on the 29th May 2018. In the meantime you can try the new version on wwwdev.ebi.ac.uk/Tools/sss/ncbiblast. If you have any concerns, please contact us via support.
EMBOSS Matcher identifies local similarities in two input sequences using a rigorous algorithm based on Bill Pearson's lalign application, version 2.0u4 (Feb. 1996)
This tool can be used in the following contexts: