MUSCLE < Multiple Sequence Alignment

Multiple Sequence Alignment

MUSCLE stands for MUltiple Sequence Comparison by Log- Expectation. MUSCLE is claimed to achieve both better average accuracy and better speed than ClustalW2 or T-Coffee, depending on the chosen options.

Important note: This tool can align up to 500 sequences or a maximum file size of 1 MB.

STEP 1 - Enter your input sequences

Enter or paste a set of sequences in any supported format:

Or upload a file: Use a example sequence | Clear sequence | See more example inputs

STEP 2 - Set your Parameters

OUTPUT FORMAT:

OUTPUT TREE

STEP 3 - Submit your job

Be notified by email (Tick this box if you want to be notified by email when the results are available)

EMAIL:

TITLE: If available, the title will be included in the subject of the notification email and can be used as a way to identify your analysis

If you use this service, please consider citing the following publication: Search and sequence analysis tools services from EMBL-EBI in 2022

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