HMMER
The HMMER web server: fast and sensitive homology searches. This site has been designed to provide near interactive searches for most queries, coupled with intuitive and interactive results visualisations.
Quickstart Tutorial
Blog news August, 2015
hmmer.org is updating
hmmer.org is moving off of Janelia tonight, into the great cloud. You may see some flakiness as DNS nameservers update.
more...Download HMMER
Recent papers
R.D. Finn,
J. Clements,
W. Arndt,
B.L. Miller,
T.J. Wheeler,
F. Schreiber,
A. Bateman and
S.R. Eddy
Nucleic Acids Research (2015) Web Server Issue 43:W30-W38.
PDF
HMMER web server: interactive sequence similarity searching
R.D. Finn,
J. Clements and
S.R. Eddy
Nucleic Acids Research (2011) Web Server Issue 39:W29-W37.
PDF