HMMER
The HMMER web server: fast and sensitive homology searches. This site has been designed to provide near interactive searches for most queries, coupled with intuitive and interactive results visualisations.
Quickstart Tutorial
News February, 2022
HmmerWeb Pfam 35.0 Release
HmmerWeb 2.43 includes support for the most recent Pfam 35.0 and its 19632 protein families, used to annotate functional domains in all our hosted sequences. Find more in the official Pfam website.
Please refer to the official Changelog for additional details.Download HMMER
Papers
S.C. Potter,
A. Luciani,
S.R. Eddy
Y. Park,
R. Lopez and
R.D. Finn,
Nucleic Acids Research (2018) Web Server Issue 46:W200-W204.
PDF
R.D. Finn,
J. Clements,
W. Arndt,
B.L. Miller,
T.J. Wheeler,
F. Schreiber,
A. Bateman and
S.R. Eddy
Nucleic Acids Research (2015) Web Server Issue 43:W30-W38.
PDF
HMMER web server: interactive sequence similarity searching
R.D. Finn,
J. Clements and
S.R. Eddy
Nucleic Acids Research (2011) Web Server Issue 39:W29-W37.
PDF