The HMMER web server: fast and sensitive homology searches. This site has been designed to provide near interactive searches for most queries, coupled with intuitive and interactive results visualisations.

News February, 2022

HmmerWeb Pfam 35.0 Release

HmmerWeb 2.43 includes support for the most recent Pfam 35.0 and its 19632 protein families, used to annotate functional domains in all our hosted sequences. Find more in the official Pfam website.

Please refer to the official Changelog for additional details.

Papers

HMMER web server: 2018 update

S.C. Potter, A. Luciani, S.R. Eddy Y. Park, R. Lopez and R.D. Finn,
Nucleic Acids Research (2018) Web Server Issue 46:W200-W204. PDF

HMMER web server: 2015 update

R.D. Finn, J. Clements, W. Arndt, B.L. Miller, T.J. Wheeler, F. Schreiber, A. Bateman and S.R. Eddy
Nucleic Acids Research (2015) Web Server Issue 43:W30-W38. PDF

HMMER web server: interactive sequence similarity searching

R.D. Finn, J. Clements and S.R. Eddy
Nucleic Acids Research (2011) Web Server Issue 39:W29-W37. PDF

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