Dbfetch
ID BC145647; SV 1; linear; mRNA; STD; MUS; 1183 BP. XX AC BC145647; XX DT 17-JUN-2007 (Rel. 92, Created) DT 05-DEC-2007 (Rel. 94, Last updated, Version 3) XX DE Mus musculus steroid 5 alpha-reductase 3, mRNA (cDNA clone MGC:175534 DE IMAGE:40130950), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1183 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1183 RG NIH MGC Project RA ; RT ; RL Submitted (12-JUN-2007) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 83bfd4f258b2d810cb69a50c3244a752. DR Ensembl-Gn; ENSMUSG00000029233; mus_musculus. DR Ensembl-Gn; MGP_NODShiLtJ_G0029443; mus_musculus_nodshiltj. DR Ensembl-Tr; ENSMUST00000031143; mus_musculus. DR Ensembl-Tr; MGP_NODShiLtJ_T0071874; mus_musculus_nodshiltj. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Ambion CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRCK Plate: 7 Row: A Column: 7. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1183 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_377" FT /clone="MGC:175534 IMAGE:40130950" FT /tissue_type="Brain, PCR rescued clones" FT /note="Vector: pCR4-TOPO; Clone identification sequence FT tag: GTTTCATG" FT /db_xref="taxon:10090" FT gene 1..1183 FT /gene="Srd5a3" FT /note="synonyms: H5ar, A430076C09" FT CDS 52..1044 FT /codon_start=1 FT /gene="Srd5a3" FT /product="Srd5a3 protein" FT /db_xref="GOA:Q9WUP4" FT /db_xref="InterPro:IPR001104" FT /db_xref="InterPro:IPR039698" FT /db_xref="MGI:MGI:1930252" FT /db_xref="UniProtKB/Swiss-Prot:Q9WUP4" FT /protein_id="AAI45648.1" FT /translation="MAGWAGFELSALNPLRTLWLALAAAFLFALLLQLAPARLLPSCAL FT FQDLLRYGKTKQSGSRRPAVCRAFDVPKRYFSHFYVISVVWNGSLLWLLSQSLFLGAPF FT PNWLGALLRTLGATQFQALEMESKASRMPAAELALSAFLVLVFLWVHSLRRLFECFYVS FT VFSNAAIHVVQYCFGLVYYVLVGLTVLSQVPMDDKNVYVLGKNLLIQARWFHILGMVMF FT FWSSAHQYKCHVILSNLRRNKKGVVIHCQHRIPFGDWFEYVSSANYLAELMIYISMAVT FT FGLHNLTWWLVVTYVFFSQALSAFFNHKFYRSTFVSYPKHRKAFLPFLF" FT misc_difference 330 FT /gene="Srd5a3" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 343 FT /gene="Srd5a3" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 376 FT /gene="Srd5a3" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'G' in cDNA, 'S' in the mouse genome." FT misc_difference 405 FT /gene="Srd5a3" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 540 FT /gene="Srd5a3" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 567 FT /gene="Srd5a3" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 642 FT /gene="Srd5a3" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 944 FT /gene="Srd5a3" FT /note="'T' in cDNA is 'C' in the mouse genome; amino acid FT difference: 'F' in cDNA, 'S' in the mouse genome." FT misc_difference 1089 FT /gene="Srd5a3" FT /note="'G' in cDNA is 'T' in the mouse genome." FT misc_difference 1162^1163 FT /gene="Srd5a3" FT /note="4 bases in the mouse genome, AGCC, are not found in FT cDNA." XX SQ Sequence 1183 BP; 214 A; 341 C; 325 G; 303 T; 0 other; gagagaagga gggcggcgcg gcggcgcgca tctgtagccg gctcccgggc tatggctggg 60 tgggccgggt ttgagctctc ggccctgaac cccctgcgga cgctgtggct ggcgctggcc 120 gccgccttcc tgttcgcgct gctgctgcag ctggcgcccg ccaggctgct gccgagctgc 180 gcgctcttcc aggacctgct ccgctacggg aagaccaagc agtccggctc gcggcgcccc 240 gccgtctgca gggccttcga tgtccccaag aggtactttt ctcacttcta cgtcatctca 300 gttgtgtgga atggctccct gctctggctg ctttctcagt cgctgttcct gggagcacct 360 tttccaaact ggcttggtgc tctgctcaga actcttgggg ccacgcagtt ccaagccctg 420 gagatggagt ccaaggcttc tcggatgcca gcggctgagc tggctctgtc tgccttcttg 480 gtcttggtgt tcctctgggt ccacagcctt cggagactct ttgagtgctt ctacgtcagc 540 gtcttctcta atgcagccat tcacgtcgtg cagtactgtt tcgggcttgt ctactatgtg 600 cttgttggcc tgactgtact gagccaagtg cccatggatg acaagaatgt gtatgttctg 660 gggaagaatc tactgataca agcccggtgg ttccacatcc tgggcatggt gatgttcttc 720 tggtcatccg cccatcagta taaatgccac gtcatcctca gcaacctcag gagaaacaaa 780 aaaggtgtgg tcatccactg ccagcaccgg atcccctttg gagactggtt cgagtacgtg 840 tcttcagcta actacctagc agagctgatg atctacatct ccatggctgt cacctttggg 900 ctccacaact taacctggtg gctggtggtg acgtatgtct tcttcagcca agccttgtcc 960 gcattcttca accacaagtt ctacagaagc acatttgtct cctacccaaa gcataggaaa 1020 gcgttcctcc catttttgtt ttaaagcggg ctttatggtg aagaaagcca ggtgacagat 1080 tccattccga gaggcactga gacagagacc aaagtacact ttctgcggga atgtttgacg 1140 gtccttgttc tacttcagag ccgagcagtg ttcaccgagc gag 1183 //