Dbfetch
ID BC138619; SV 1; linear; mRNA; STD; MUS; 2922 BP. XX AC BC138619; XX DT 13-MAY-2008 (Rel. 95, Created) DT 13-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with DE thrombospondin type 1 motif, 5 (aggrecanase-2), mRNA (cDNA clone MGC:170244 DE IMAGE:8861639), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2922 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2922 RG NIH MGC Project RA ; RT ; RL Submitted (29-MAR-2007) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; ce14e3847a69be907a98fed9d2866094. DR Ensembl-Gn; ENSMUSG00000022894; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022974; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022942; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022912; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022944; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022706; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023391; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022228; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022675; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022809; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022784; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022878; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022803; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023409; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021970; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022276; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023611; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0044941; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0044923; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0044892; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0044898; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0044637; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0045379; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0044759; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0044549; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0044702; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0044654; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0044776; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0044633; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0045436; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0044336; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0044006; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Ambion CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: LLDM Plate: 667 Row: l Column: 21. XX FH Key Location/Qualifiers FH FT source 1..2922 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_378" FT /clone="MGC:170244 IMAGE:8861639" FT /tissue_type="Brain, PCR rescued clones" FT /note="Vector: pCR4-TOPO with reversed insert; Clone FT identification sequence tag: AATACGCA" FT /db_xref="taxon:10090" FT gene 1..2922 FT /gene="Adamts5" FT /note="synonyms: ADAMTS11, ASMP-2, ADAMTS1, ADAM-TS5" FT CDS 43..2835 FT /codon_start=1 FT /gene="Adamts5" FT /product="a disintegrin-like and metallopeptidase FT (reprolysin type) with thrombospondin type 1 motif, 5 FT (aggrecanase-2)" FT /db_xref="GOA:Q9R001" FT /db_xref="InterPro:IPR000884" FT /db_xref="InterPro:IPR001590" FT /db_xref="InterPro:IPR002870" FT /db_xref="InterPro:IPR006586" FT /db_xref="InterPro:IPR010294" FT /db_xref="InterPro:IPR013273" FT /db_xref="InterPro:IPR013276" FT /db_xref="InterPro:IPR024079" FT /db_xref="InterPro:IPR036383" FT /db_xref="InterPro:IPR041645" FT /db_xref="MGI:MGI:1346321" FT /db_xref="UniProtKB/Swiss-Prot:Q9R001" FT /protein_id="AAI38620.1" FT /translation="MRLEWAPLLLLLLLLSASCLSLAADSPAAAPAQDKTRQPQAAAAA FT AEPDQPQGEETRERGHLQPLAGQRRSGGLVQNIDQLYSGGGKVGYLVYAGGRRFLLDLE FT RDDTVGAAGSIVTAGGGLSASSGHRGHCFYRGTVDGSPRSLAVFDLCGGLDGFFAVKHA FT RYTLKPLLRGSWAEYERIYGDGSSRILHVYNREGFSFEALPPRASCETPASPSGPQESP FT SVHSRSRRRSALAPQLLDHSAFSPSGNAGPQTWWRRRRRSISRARQVELLLVADSSMAR FT MYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLTDKDTSLEVSKNAATTLKN FT FCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIED FT DGLHAAFTVAHEIGHLLGLSHDDSKFCEENFGTTEDKRLMSSILTSIDASKPWSKCTSA FT TITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQCNLTFGPEYSVCPGMDVCARL FT WCAVVRQGQMVCLTKKLPAVEGTPCGKGRVCLQGKCVDKTKKKYYSTSSHGNWGSWGPW FT GQCSRSCGGGVQFAYRHCNNPAPRNSGRYCTGKRAIYRSCSVTPCPPNGKSFRHEQCEA FT KNGYQSDAKGVKTFVEWVPKYAGVLPADVCKLTCRAKGTGYYVVFSPKVTDGTECRPYS FT NSVCVRGRCVRTGCDGIIGSKLQYDKCGVCGGDNSSCTKIIGTFNKKSKGYTDVVRIPE FT GATHIKVRQFKAKDQTRFTAYLALKKKTGEYLINGKYMISTSETIIDINGTVMNYSGWS FT HRDDFLHGMGYSATKEILIVQILATDPTKALDVRYSFFVPKKTTQKVNSVISHGSNKVG FT PHSTQLQWVTGPWLACSRTCDTGWHTRTVQCQDGNRKLAKGCLLSQRPSAFKQCLLKKC FT " XX SQ Sequence 2922 BP; 705 A; 776 C; 825 G; 616 T; 0 other; gctagactca gtcgcgcagc ccctcccggc gggcagcgca ctatgcggct cgagtgggcg 60 cccttgttgc tgctactgct gctgctgagc gcgtcctgcc tgtccctggc cgctgacagc 120 cccgccgcgg cacctgccca ggataaaacc aggcagcctc aggctgcagc agcggccgcc 180 gagccggacc agccgcaggg ggaggaaaca cgggagcgag gccatttaca acccttggcc 240 gggcagcgca ggagcggcgg gctggtccag aatatagacc aactctactc tggcggtggc 300 aaagtgggct accttgtcta cgcgggcggc cggaggttcc tgctggacct ggagagagat 360 gacacagtgg gtgctgctgg tagcatcgtt actgcaggag gagggctgag cgcatcctct 420 ggccaccggg gtcactgttt ctacagaggc accgtggacg gcagccctcg atccctagct 480 gtctttgacc tctgcggggg tctcgatggc ttctttgcag tcaagcatgc gcgctacact 540 ctaaagccac tcctgcgtgg gtcctgggca gagtatgaac gaatttatgg ggatggatct 600 tcccgcatcc tgcatgtcta caaccgcgag ggctttagct tcgaggccct gccgccacgc 660 gccagttgcg agactcctgc atccccatct gggccccaag agagcccctc ggtgcacagt 720 agatctagga gacgctcagc gctggccccg cagctgctgg accactcagc tttctcgcca 780 tctgggaacg cgggacctca gacttggtgg aggcgtaggc gccgttccat ctccagggcc 840 cgccaggtgg agctcctctt ggtggctgac tcgtccatgg ccaggatgta tgggcggggc 900 ctgcagcatt acctgctgac cctggcctcc atcgccaaca ggctgtacag tcatgcaagc 960 attgagaacc acatccgcct ggcggtggtg aaggtggttg tgctgacgga caaggacacg 1020 agtctggagg tgagcaagaa tgcggccacg accctcaaga acttttgcaa atggcagcac 1080 caacataacc agctagggga tgatcacgaa gagcactacg atgcagccat cctgttcacc 1140 cgagaggatt tatgtgggca tcattcatgt gacaccctgg gaatggcaga cgttgggacc 1200 atatgttctc cggagcgcag ctgtgcagtg attgaagatg atggcctcca tgcagccttc 1260 actgtggctc atgaaattgg gcatctactt ggcctttctc atgacgattc caaattctgt 1320 gaagagaact tcggtactac agaagacaag cgtttaatgt cttcaatcct taccagcatc 1380 gatgcatcca agccctggtc caaatgcacg tcagccacca tcacagaatt cctggatgat 1440 ggtcatggta attgtttgct agacctacca cggaagcaga ttttgggtcc cgaggaactc 1500 ccaggacaga cctacgatgc cacccagcag tgcaacttga catttgggcc tgagtactcg 1560 gtgtgccctg gcatggatgt ctgtgcgcgg ctgtggtgtg ctgtggtgcg ccaaggccaa 1620 atggtgtgtc tgaccaagaa gctgccggct gtggagggca ctccctgtgg gaagggaaga 1680 gtctgccttc aaggcaaatg tgtggacaaa actaagaaaa aatattactc gacatcaagc 1740 catggaaatt gggggtcctg gggcccctgg ggtcagtgtt ctcgctcatg cgggggagga 1800 gtgcagtttg cctaccgcca ttgtaataac cctgcacctc gaaacagtgg ccgctactgc 1860 acagggaaga gggccatata ccgttcctgc agtgttacac cctgcccacc caatggtaaa 1920 tcttttcgcc atgagcagtg tgaagccaaa aatggctatc agtctgatgc aaaaggagtc 1980 aaaacatttg tagaatgggt tcccaaatat gcaggtgtcc tgccggcaga tgtgtgcaag 2040 cttacctgca gagctaaggg cacaggctac tatgtggtct tttctccaaa ggttacggat 2100 gggactgaat gcaggccgta cagcaactct gtgtgtgtcc gaggacggtg tgtgagaact 2160 ggatgtgacg gcattattgg ctcaaagcta caatatgaca agtgtggagt gtgcggaggg 2220 gataactcca gttgtacaaa gattatcgga accttcaata aaaaaagcaa gggttatact 2280 gacgttgtga ggatccctga aggagcaacc cacataaaag tccgacagtt caaagccaaa 2340 gaccagacta gattcactgc ctacttagcc ctgaagaaga aaactggcga gtaccttatc 2400 aatggcaagt acatgatttc cacttcagag accatcatcg acatcaatgg taccgtcatg 2460 aactacagtg gatggagcca cagagatgat tttttacatg ggatgggcta ttcagccaca 2520 aaagaaatcc tgatcgtgca gatccttgcc acagacccaa ctaaagcgct agacgtccgt 2580 tacagctttt ttgttcccaa gaagaccact caaaaagtaa actctgtcat cagccatggc 2640 agcaacaagg tgggaccaca ctctacacag ctgcagtggg tgacaggtcc atggctggcc 2700 tgctccagga cctgtgacac aggctggcac actaggaccg tgcagtgcca ggatggaaac 2760 aggaaattag ctaaaggatg ccttctctct cagaggcctt ctgcatttaa gcaatgtctg 2820 ctgaagaaat gttagcctgt ggtttactct aatgcacaaa aaaacaacag gaggatcatc 2880 gcagatacag ctgtggtgaa gacaaggcct acccaaagca ca 2922 //