Dbfetch
ID BC100758; SV 1; linear; mRNA; STD; MUS; 1270 BP. XX AC BC100758; XX DT 03-AUG-2005 (Rel. 84, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 2) XX DE Mus musculus chemokine (C-C motif) receptor 6, mRNA (cDNA clone MGC:124221 DE IMAGE:40046794), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1270 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1270 RG NIH MGC Project RA ; RT ; RL Submitted (01-AUG-2005) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 38d07ab8861d3b2c5f9d0744b85a28e8. DR Ensembl-Gn; ENSMUSG00000040899; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0023130; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0023098; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0023063; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0023098; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022861; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023542; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022376; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022833; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022966; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022935; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0023037; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022956; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023567; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0022124; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022432; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000097418; mus_musculus. DR Ensembl-Tr; ENSMUST00000164411; mus_musculus. DR Ensembl-Tr; ENSMUST00000166348; mus_musculus. DR Ensembl-Tr; ENSMUST00000167956; mus_musculus. DR Ensembl-Tr; ENSMUST00000177568; mus_musculus. DR Ensembl-Tr; ENSMUST00000180103; mus_musculus. DR Ensembl-Tr; ENSMUST00000231545; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0045479; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0045463; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0045419; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0045424; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0045174; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0045907; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0045291; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0045089; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0045229; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0045189; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0045317; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0045168; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0045975; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0044875; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0044559; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Baylor Human Genome Sequencing Center CC cDNA Library Preparation: Baylor Human Genome Sequencing Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAM Plate: 9 Row: j Column: 6. XX FH Key Location/Qualifiers FH FT source 1..1270 FT /organism="Mus musculus" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_285" FT /clone="MGC:124221 IMAGE:40046794" FT /tissue_type="PCR rescued clones" FT /note="Vector: pCR-Blunt II-TOPO with reversed insert; FT Clone identification sequence tag: AAAAGTCC" FT /db_xref="taxon:10090" FT gene 1..1270 FT /gene="Ccr6" FT CDS 144..1247 FT /codon_start=1 FT /gene="Ccr6" FT /product="Ccr6 protein" FT /db_xref="GOA:Q542B6" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR000355" FT /db_xref="InterPro:IPR004067" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:1333797" FT /db_xref="UniProtKB/TrEMBL:Q542B6" FT /protein_id="AAI00759.1" FT /translation="MNSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAY FT SLICVFGLLGNIMVVMTFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWV FT FSDALCKLMKGTYAVNFNCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAV FT WFISIIISSPTFIFNKKYELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFM FT VFCYLFIIKTLVQAQNSKRHRAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKVGRSCS FT TEKVLAYTRNVAEVLAFLHCCLNPVLYAFIGQKFRNYFMKIMKDVWCMRRKNKMPGFLC FT ARVYSESYISRQTSETVENDNASSFTM" XX SQ Sequence 1270 BP; 302 A; 328 C; 306 G; 334 T; 0 other; tcctgggact tgcttcctgg ccaccgaggt gtgaacaact tcacagttct aatagtcctc 60 acattcttag gactggagcc tggataacca ctgaggcagg agtacctggc cagtctactt 120 tggagctcag cattttctgg ggaatgaatt ccacagagtc ctactttgga acggatgatt 180 atgacaacac agagtattat tctattcctc cagaccatgg gccatgctcc ctagaagagg 240 tcagaaactt caccaaggta tttgtgccaa ttgcctactc cttaatatgt gtctttggcc 300 tcctgggcaa cattatggtg gtgatgacct ttgccttcta caagaaagcc agatccatga 360 ctgacgtcta cctgttgaac atggccatca cagacatact ctttgtcctc accctaccgt 420 tctgggcagt tactcatgcc accaacactt gggttttcag cgatgcactg tgtaaactga 480 tgaaaggcac atatgcggtc aactttaact gtgggatgct gctcctggcc tgtatcagca 540 tggaccggta cattgccatc gtccaggcaa ccaaatcttt ccgggtacgc tccagaacac 600 tgacgcacag taaggtcatc tgtgtggcag tgtggttcat ctccatcatc atctcaagcc 660 ctacatttat cttcaacaag aaatacgagc tgcaggatcg tgatgtctgt gagccacggt 720 acaggtctgt ctcagagccc atcacgtgga agctgctggg tatgggactg gagctgttct 780 ttgggttctt cacccctttg ctgtttatgg tgttctgcta tctgttcatt atcaagacct 840 tggtgcaggc ccagaactcc aagaggcaca gagccatccg agtcgtgatc gctgtggttc 900 tcgtgttcct ggcttgtcag atccctcaca acatggtcct cctcgtgact gcggtcaaca 960 cgggcaaagt gggccggagc tgcagcaccg agaaagtcct cgcctacacc aggaacgtgg 1020 ccgaggtcct ggctttcctg cattgctgcc tcaaccccgt gttgtatgcg tttattggac 1080 agaaattcag aaactacttc atgaagatca tgaaggatgt gtggtgtatg agaaggaaga 1140 ataagatgcc tggcttcctc tgtgcccggg tttactcgga aagctacatc tccaggcaga 1200 ccagtgagac cgtcgaaaat gataatgcat cgtcctttac catgtaacac gagagcacaa 1260 agcaacattg 1270 //