Dbfetch
ID BC081443; SV 1; linear; mRNA; STD; MUS; 690 BP. XX AC BC081443; XX DT 03-SEP-2004 (Rel. 81, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 7) XX DE Mus musculus presenilin enhancer 2 homolog (C. elegans), mRNA (cDNA clone DE MGC:102026 IMAGE:6814799), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-690 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-690 RG NIH MGC Project RA ; RT ; RL Submitted (01-SEP-2004) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e1f30ee75d3b21da7828b8da6ef33a1b. DR Ensembl-Gn; ENSMUSG00000036835; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0032028; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0032005; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0031938; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0032012; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0031731; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0032478; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0031065; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0031697; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0031849; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0031806; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0031930; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0031842; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0032506; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_WSBEiJ_G0031175; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000043898; mus_musculus. DR Ensembl-Tr; ENSMUST00000207747; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0082960; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0083028; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0082966; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0082987; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0082577; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0083461; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0083096; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0082526; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0082697; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0082571; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0082715; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0082594; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0083735; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_WSBEiJ_T0081632; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 195 Row: g Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981294. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..690 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FV0" FT /clone="MGC:102026 IMAGE:6814799" FT /tissue_type="Brain, mouse, 13.5, 14.5, 16.5, 17.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..690 FT /gene="Psenen" FT CDS 218..523 FT /codon_start=1 FT /gene="Psenen" FT /product="presenilin enhancer 2 homolog (C. elegans)" FT /db_xref="GOA:Q9CQR7" FT /db_xref="InterPro:IPR019379" FT /db_xref="MGI:MGI:1913590" FT /db_xref="UniProtKB/Swiss-Prot:Q9CQR7" FT /protein_id="AAH81443.1" FT /translation="MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLAP FT AYTEQSQIKGYVWRSAVGFLFWVIILATWITIFQIYRPRWGALGDYLSFTIPLGTP" FT misc_difference 654..690 FT /gene="Psenen" FT /note="polyA tail: 37 bases do not align to the mouse FT genome." XX SQ Sequence 690 BP; 179 A; 184 C; 164 G; 163 T; 0 other; agcggagggg gtggggtgcg aggggggctg ggcaggagaa gaaaaaaaaa agcgacaaca 60 aactccactg aaaactgcgg catctcccgc aaatctcccg caaaggaatc caggcagaag 120 ggataaaccg cactggggcg tggttgctcg tgatcttgcg tctgtcattt gggtcttgct 180 ctgcagaccc ttaggaccac cgggctccag cgcaactatg aacttggagc gggtatccaa 240 tgaggagaag ttgaacctgt gccggaagta ctatcttggt ggatttgcgt tcctgccttt 300 tctttggtta gtcaacattt tctggttctt cagagaggcg ttcctcgccc cagcctacac 360 agagcagagc caaatcaaag gctatgtttg gcgctcagct gtgggcttcc tcttctgggt 420 gatcattctc gccacctgga tcaccatctt ccagatctac cggccccgct ggggcgctct 480 tggggactac ctctccttca ccattcccct gggcactccc taacaacttc ataagctgct 540 gatctgttct ttctcccagg atgaaggctt ctctgctcta ggctttccct cagaccctga 600 agacatctgt ttctcatttc ccatctgccc caataaagga ccctaacttt aaaaaaaaaa 660 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 690 //