Dbfetch
ID BC057956; SV 1; linear; mRNA; STD; MUS; 2935 BP. XX AC BC057956; XX DT 01-OCT-2003 (Rel. 77, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 5) XX DE Mus musculus sema domain, immunoglobulin domain (Ig), short basic domain, DE secreted, (semaphorin) 3E, mRNA (cDNA clone MGC:68023 IMAGE:5357516), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2935 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2935 RG NIH MGC Project RA ; RT ; RL Submitted (08-SEP-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 5a6fd91adb2be320015e2bb986e5ce91. DR Ensembl-Gn; ENSMUSG00000063531; mus_musculus. DR Ensembl-Tr; ENSMUST00000073957; mus_musculus. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: The Cepko Laboratory CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 123 Row: p Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 7549788. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2935 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_94" FT /clone="MGC:68023 IMAGE:5357516" FT /tissue_type="Eye, retina, mouse strain C57Bl\6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2935 FT /gene="Sema3e" FT /note="synonym: mKIAA0331" FT CDS 533..2860 FT /codon_start=1 FT /gene="Sema3e" FT /product="sema domain, immunoglobulin domain (Ig), short FT basic domain, secreted, (semaphorin) 3E" FT /db_xref="GOA:P70275" FT /db_xref="InterPro:IPR001627" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013151" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR015513" FT /db_xref="InterPro:IPR015943" FT /db_xref="InterPro:IPR016201" FT /db_xref="InterPro:IPR027231" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR036352" FT /db_xref="MGI:MGI:1340034" FT /db_xref="UniProtKB/Swiss-Prot:P70275" FT /protein_id="AAH57956.1" FT /translation="MAPAGHILTLLLWGHLLELWTPGHSANPSYPRLRLSHKELLELNR FT TSIFQSPLGFLDLHTMLLDEYQERLFVGGRDLVYSLNLERVSDGYREIYWPSTAVKVEE FT CIMKGKDANECANYIRVLHHYNRTHLLTCATGAFDPHCAFIRVGHHSEEPLFHLESHRS FT ERGRGRCPFDPNSSFVSTLVGNELFAGLYSDYWGRDSAIFRSMGKLGHIRTEHDDERLL FT KEPKFVGSYMIPDNEDRDDNKMYFFFTEKALEAENNAHTIYTRVGRLCVNDMGGQRILV FT NKWSTFLKARLVCSVPGMNGIDTYFDELEDVFLLPTRDPKNPVIFGLFNTTSNIFRGHA FT VCVYHMSSIREAFNGPYAHKEGPEYHWSLYEGKVPYPRPGSCASKVNGGKYGTTKDYPD FT DAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAVDRVEAEDGQYDVLFIGTDTG FT IVLKVITIYNQETEWMEEVILEELQIFKDPAPIISMEISSKRQQLYIGSASAVAQVRFH FT HCDMYGSACADCCLARDPYCAWDGISCSRYYPTGAHAKRRFRRQDVRHGNAAQQCFGQQ FT FVGDALDRTEERLAYGIESNSTLLECTPRSLQAKVIWFVQKGRDVRKEEVKTDDRVVKM FT DLGLLFLRVRKSDAGTYFCQTVEHNFVHTVRKITLEVVEEHKVEGMFHKDHEEERHHKM FT PCPPLSGMSQGTKPWYKEFLQLIGYSNFQRVEEYCEKVWCTDKKRKKLKMSPSKWKYAN FT PQEKRLRSKAEHFRLPRHTLLS" FT misc_difference 2918..2935 FT /gene="Sema3e" FT /note="polyA tail: 18 bases do not align to the mouse FT genome." XX SQ Sequence 2935 BP; 802 A; 703 C; 782 G; 648 T; 0 other; ggcggcatcc ccgctgggtg gatcccgcgc tcctggcgca agtggcactt cttgcttcta 60 attatcgaga ggagaggcga atacgaacta gctgctcggc aagtcagtgc aggaggctga 120 cttctgggag gctggcgggg aggctggggg aagagctggg ggaggctgct gctctgctcc 180 gactgttttc tcaatgaata gctggcgggg agactgaagc tagccacagc ctcctcctca 240 ctccgcgtct gggtgacggc gacagcacca gcccggacct ggctctcaag acgcgctcct 300 tggacggtct cttgctccgc gcttctaacc accgggccca aggacagaaa ggcttagcgg 360 atccaaatat tgcccggcaa atggcacttg ggaatggtat tttctgatga caaccccttc 420 tgtttgtgac aaagcctgtc gcccgcagtt gcccctggag ggaagtacta agtaaaactc 480 aatcctgtct taaagtgtgg ctgcaggggc cagaggagag ccagcacgca ccatggcacc 540 ggccggacac atcctcacct tgctgctctg gggtcacctg ctggaactct ggaccccagg 600 tcactccgcg aacccctcct accccaggct acgcctgtca cataaagaac ttttggaact 660 gaataggact tcaatatttc aaagccccct tggatttctt gatctccata caatgctgct 720 ggatgagtat caagaacggc tctttgtggg aggcagagac cttgtctatt ccctgaactt 780 ggaacgagtc agtgacggct acagagagat atactggccg agcacagcag taaaggtaga 840 agaatgcata atgaaaggaa aagacgcaaa tgagtgtgcc aattatatcc gggttttgca 900 tcactacaac aggacacacc ttctgacctg tgctactgga gcttttgatc cacactgtgc 960 cttcatcaga gtcgggcacc attcagagga acccctgttt cacctggagt cacacagatc 1020 tgagagagga aggggcagat gtccttttga ccccaactcc tcctttgtgt ccacgctagt 1080 tgggaatgag ctgtttgctg gactctacag tgactattgg ggcagagact cggcgatctt 1140 ccgcagcatg gggaagttag gccatattcg cactgagcat gacgatgagc ggctcctgaa 1200 agaaccaaaa tttgtaggtt catatatgat tcctgataac gaagaccgag atgacaacaa 1260 aatgtacttt ttctttactg agaaggcgct ggaggcggag aacaacgccc acacgatcta 1320 cacccgagtg gggcggctgt gcgtgaatga catgggagga cagagaatcc tggtgaacaa 1380 gtggagcact ttccttaaag cgcggctggt ttgctcagtg ccgggaatga atggaatcga 1440 cacatacttt gacgaactag aggatgtgtt tttactgccg accagagatc ctaagaatcc 1500 agtgatattt ggactgttta atactaccag caatatattt agaggccatg ctgtatgtgt 1560 gtatcacatg tcaagtatcc gggaagcctt taatggccca tatgctcata aagaaggccc 1620 tgaataccac tggtcactat atgaaggaaa agtcccctac ccaaggcctg gttcctgtgc 1680 cagcaaagta aacggaggca agtatggaac caccaaagat taccccgatg acgccatccg 1740 gttcgcaagg atgcatcctc taatgtatca gcccataaaa cctgttcata aaaaaccaat 1800 actggtaaaa acagatggaa aatacaacct gaggcaactt gccgtggatc gggtggaagc 1860 ggaggatggc cagtatgacg tcttatttat tgggacagac acaggaattg tgctgaaagt 1920 aatcacaatt tacaaccaag aaacagagtg gatggaggaa gtcattctag aggaacttca 1980 aatattcaag gatccagccc ctatcatttc tatggaaatt tcttcaaaga gacaacagct 2040 ttacattgga tcagcctctg ctgtggcaca agtcagattc catcactgcg acatgtatgg 2100 cagtgcttgt gctgactgct gcctggctcg agacccgtac tgtgcctggg atggcatatc 2160 ctgctccagg tactacccaa caggtgcaca cgcaaagagg aggttccgca ggcaggacgt 2220 tcggcatggc aacgccgccc aacagtgctt tggacagcaa tttgttggag acgcgttgga 2280 caggactgaa gagaggctgg cttatggcat agagagcaac agtactctgt tggaatgcac 2340 cccgcgatca ctacaagcaa aagtcatctg gtttgtacag aagggacgcg acgtaagaaa 2400 agaagaggtg aagacggatg acagagttgt caagatggac ttgggcttgc tcttcctcag 2460 agtacgcaag tcagatgcag ggacctattt ttgccagaca gtagaacaca attttgtcca 2520 tactgtgcgt aaaatcacct tggaggtggt cgaagagcat aaagtggagg gcatgtttca 2580 taaggaccat gaagaggaaa gacatcacaa gatgccctgc cctcccttaa gcggtatgtc 2640 tcaggggaca aaaccgtggt acaaggaatt cttgcagctg attggctaca gcaacttcca 2700 gagagtggaa gaatactgcg aaaaggtgtg gtgtacagat aagaagagga aaaagcttaa 2760 aatgtctccc tccaagtgga agtatgccaa cccccaggaa aagaggcttc gctctaaagc 2820 tgagcacttc cgcctgccca ggcacacgct gctctcctga gggcgccctc tgccggcggc 2880 tgaggaacct aggatggaaa cattttttta aagggggtta aaaaaaaaaa aaaaa 2935 //