Dbfetch
ID BC057926; SV 1; linear; mRNA; STD; MUS; 2490 BP. XX AC BC057926; XX DT 18-SEP-2003 (Rel. 77, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus matrix metallopeptidase 16, mRNA (cDNA clone MGC:68000 DE IMAGE:5292478), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2490 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2490 RG NIH MGC Project RA ; RT ; RL Submitted (08-SEP-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; c72ac0541fa63d679082d2cc9d37f046. DR Ensembl-Gn; ENSMUSG00000028226; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0028077; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0028035; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0028000; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0028046; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027776; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0028489; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0027231; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0027749; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0027892; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0027858; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0028001; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0027891; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0028548; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0026951; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0027308; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000029881; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0064794; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0064824; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0064764; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0064743; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0064434; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0065235; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0064765; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0064384; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0064505; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0064456; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0064641; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0064457; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0065451; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0064287; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0063685; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Lothar Hennighausen Ph.D., Chu-Xia Deng Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 123 Row: j Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 40254543. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2490 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="129,C57BL/6J,FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam3" FT /clone="MGC:68000 IMAGE:5292478" FT /tissue_type="Mammary tumor. Brca1-/fl; MMTV-Cre model. 10 FT months old, gross tissue." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2490 FT /gene="Mmp16" FT /note="synonyms: Mt3mmp, MT3-MMP" FT misc_difference 154..155 FT /gene="Mmp16" FT /note="2 bases in cDNA are not found in the mouse genome." FT CDS 242..2065 FT /codon_start=1 FT /gene="Mmp16" FT /product="matrix metallopeptidase 16" FT /db_xref="GOA:Q9WTR0" FT /db_xref="InterPro:IPR000585" FT /db_xref="InterPro:IPR001818" FT /db_xref="InterPro:IPR002477" FT /db_xref="InterPro:IPR006026" FT /db_xref="InterPro:IPR018486" FT /db_xref="InterPro:IPR018487" FT /db_xref="InterPro:IPR021158" FT /db_xref="InterPro:IPR021190" FT /db_xref="InterPro:IPR021805" FT /db_xref="InterPro:IPR024079" FT /db_xref="InterPro:IPR028697" FT /db_xref="InterPro:IPR033739" FT /db_xref="InterPro:IPR036365" FT /db_xref="InterPro:IPR036375" FT /db_xref="MGI:MGI:1276107" FT /db_xref="UniProtKB/Swiss-Prot:Q9WTR0" FT /protein_id="AAH57926.1" FT /translation="MILLAFSSGRRLDFVHRSGVFFLQTLLWILCATVCGTEQYFNVEV FT WLQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVP FT DQTRGSSKFNIRRKRYALTGQKWQHKHITYSIKNVTPKVGDPETRRAIRRAFDVWQNVT FT PLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHF FT DSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPND FT DLQGIQKIYGPPDKIPPPTRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKP FT NICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYENS FT DGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGNGIPPHGIDSAIWWEDVGKTYFFKGDR FT YWRYSEEMKTMDPGYPKPITIWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKV FT EPGYPRSILKDFMGCDGPTDRDKEGLSPPDDVDIVIKLDNTASTVKAIAIVIPCILALC FT LLVLVYTVFQFKRKGTPRHILYCKRSMQEWV" FT misc_difference 2477..2490 FT /gene="Mmp16" FT /note="polyA tail: 14 bases do not align to the mouse FT genome." XX SQ Sequence 2490 BP; 696 A; 577 C; 574 G; 643 T; 0 other; ggccgggtga ggatggtgaa cacttgccgc cgctgaccct gcctttcctc tgtttctccc 60 cggctgccga gcctggcgcc catccccatc cctggacggg tgggtgaacc tgcaagcttt 120 tacccacccc aggactggat tttttttttt tttttctttt taaaaggaaa cagggagtgg 180 acattcggaa agagggagaa aacgcagggg agctcgtcca tccgttgagg cacagttcac 240 tatgatctta ctcgcattca gctctggaag aaggttggat ttcgtgcatc gttcgggtgt 300 gtttttcttg caaaccttgc tttggatttt atgtgctaca gtctgcggaa cggagcagta 360 tttcaatgtg gaggtttggt tacaaaaata cggctacctt ccaccgactg accccagaat 420 gtcagtgctg cgctctgcag agaccatgca gtcagctcta gctgccatgc agcagttcta 480 tggcattaac atgacaggaa aagtggacag aaacacaatc gactggatga agaagcctcg 540 atgcggtgta ccagaccaga caagaggcag ctctaaattc aacattcgtc gaaagcgcta 600 cgcattaact ggacagaaat ggcaacacaa acatatcact tacagtataa agaacgtaac 660 tccaaaagtt ggagatcctg agacccggag agcaattcgc cgtgcctttg atgtgtggca 720 gaatgtaact cctctaacgt ttgaagaagt tccctacagt gaactagaaa acggcaaacg 780 tgatgtggat ataaccatca tttttgcttc tggttttcat ggagacagtt ccccatttga 840 tggggaggga ggatttttgg cacatgctta tttccctgga cccggaattg gaggcgacac 900 ccattttgat tctgatgagc catggacact gggaaatccc aatcatgatg gaaacgattt 960 atttcttgta gcagtccatg agctgggaca tgctctagga ctggaacatt ccaacgaccc 1020 caccgctatc atggccccat tttatcagta catggaaaca gacaacttca agcttcctaa 1080 tgatgattta cagggcatcc agaagatata tggtccacct gacaagatcc ctccacctac 1140 aagacctcta ccgacagtgc ccccgcaccg atctgttcct ccagcagacc caaggagaca 1200 tgacaggccc aaacctcctc ggcctcccac tggcagaccc tcctatccag gagccaaacc 1260 caacatctgt gatgggaact tcaacactct agctattctt cgaagggaga tgtttgtttt 1320 caaggaccag tggttttggc gagtgagaaa caacagggtg atggatggat acccaatgca 1380 aattacttac ttctggcggg gccttcctcc cagtattgat gcagtttatg aaaacagtga 1440 cggaaatttc gtcttcttta aaggcaacaa atactgggtg ttcaaagaca caactcttca 1500 acctggttac cctcatgact tgattaccct tgggaatgga atcccccctc atggtattga 1560 ttctgccata tggtgggaag atgttggcaa aacctatttc ttcaaaggtg acaggtattg 1620 gagatatagt gaagaaatga aaaccatgga ccctggttac cccaagccca tcaccatctg 1680 gaaggggatc cctgaatcac ctcagggagc tttcgtccac aaagaaaatg gctttaccta 1740 tttctacaaa ggaaaggagt attggaaatt caacaatcag atactcaaag tagaacctgg 1800 ttatccaaga tccatcctca aggactttat gggctgtgat ggaccaacag accgagataa 1860 agaaggactc agcccaccag atgatgtaga cattgtcatc aaactggaca acacagccag 1920 cactgtgaaa gccatagcta ttgtcattcc ctgcatcttg gccttatgcc tccttgtatt 1980 ggtttacact gtgttccagt tcaagaggaa aggaacaccc cgccacatac tgtactgtaa 2040 acgctctatg caagagtggg tgtgatgtag ggatttcttt tttctttctt ttctgggagt 2100 ttgtggtaac ttgagattca agacaagagc tgttatgctg tttcctagct aggagcaggc 2160 ttgtggcagc ctgatggagg ctgaccttcc aaacctagat ggttgctggt cctgcacatg 2220 agtggaaata taatcatgga gaagcttccg tgatgcacag tatctgctgt tctccagtcc 2280 tctgtctttc tttgtcattc agttctaggc ctttcctctg cacgctcaat gcccagtaaa 2340 atttcaggat taactgaaga agaggaaata tagaagaaaa gtttcttctt aattttttaa 2400 aaaatacatt tccttctgaa atctgagccc atttctggga aagagaaaga aagagagaga 2460 aagagagaga gagagaaaaa aaaaaaaaaa 2490 //