Dbfetch
ID BC056990; SV 1; linear; mRNA; STD; MUS; 3883 BP. XX AC BC056990; XX DT 18-SEP-2003 (Rel. 77, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 4) XX DE Mus musculus gamma-aminobutyric acid (GABA-B) receptor, 1, mRNA (cDNA clone DE MGC:66925 IMAGE:6821442), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3883 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3883 RG NIH MGC Project RA ; RT ; RL Submitted (25-AUG-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; a62d54d753cc1e147291f474592da8f0. DR Ensembl-Gn; ENSMUSG00000024462; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0023695; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0023653; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0023624; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0023660; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0023422; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0024098; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022907; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0023399; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0023524; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0023497; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0023602; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0023520; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0024143; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0022659; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022974; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000025338; mus_musculus. DR Ensembl-Tr; ENSMUST00000172792; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0047663; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0047643; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0047604; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0047610; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0047342; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0048093; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0047404; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0047276; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0047375; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0047343; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0047477; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0047351; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0048188; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0046991; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0046665; mus_musculus_wsbeij. DR EuropePMC; PMC3729013; 23904795. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, CC Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, CC Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, CC Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, CC Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie CC Schein, Asim Siddiqui, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 126 Row: g Column: 16. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 33) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3883 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FY0" FT /clone="MGC:66925 IMAGE:6821442" FT /tissue_type="Brain, mouse, 13.5,14.5,16.5,17.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..3883 FT /gene="Gabbr1" FT /note="synonyms: GABAbR1, bM573K1.1" FT CDS 50..2584 FT /codon_start=1 FT /gene="Gabbr1" FT /product="Gabbr1 protein" FT /db_xref="GOA:Q9WV18" FT /db_xref="InterPro:IPR000436" FT /db_xref="InterPro:IPR001828" FT /db_xref="InterPro:IPR002455" FT /db_xref="InterPro:IPR002456" FT /db_xref="InterPro:IPR017978" FT /db_xref="InterPro:IPR028082" FT /db_xref="InterPro:IPR035976" FT /db_xref="MGI:MGI:1860139" FT /db_xref="UniProtKB/Swiss-Prot:Q9WV18" FT /protein_id="AAH56990.1" FT /translation="MGPGGPCTPVGWPLPLLLVMAAGVAPVWASHSPHLPRPHPRVPPH FT PSSERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCD FT PGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRF FT PTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITF FT RQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYAD FT NWFKTYDPSINCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRH FT PEETGGFQEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQIYRAMNSS FT SFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPA FT DQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTA FT VGCSLALAAVFPLGLDGYHIGRSQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFT FT KKEEKKERRKTLEPWKLYATVGLLVGMDILTLAIWQIVDPLHRTIETFAKEEPKEDIDV FT SILPQLEHCSSKKMNTWLGIFYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYN FT VAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQSEA FT QDTMKTGSSTNNNEEEKSRLLEKENRELEKIIAEKEERVSELRHQLQSRQQIRSRRHPP FT TPPDPSGGLPRGPSEPPDRLSCDGSRVHLLYK" FT misc_difference 1799 FT /gene="Gabbr1" FT /note="'C' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'R' in cDNA, 'W' in the mouse genome." FT misc_difference 3103 FT /gene="Gabbr1" FT /note="'T' in cDNA is 'G' in the mouse genome." FT misc_difference 3864..3883 FT /gene="Gabbr1" FT /note="polyA tail: 20 bases do not align to the mouse FT genome." XX SQ Sequence 3883 BP; 865 A; 1052 C; 976 G; 990 T; 0 other; cccctgagct gcccccaccc caaggaggcc gcccccgccc ctcctcgcca tgggcccggg 60 gggaccctgt accccggtgg ggtggccgct gcctcttctg ctggtgatgg cggctggggt 120 ggctccggtg tgggcctctc actcccctca tctcccgcgg cctcacccga gggtcccccc 180 gcacccctcc tcagaacggc gtgcagtata catcggggcg ctgtttccca tgagcggggg 240 ctggccgggg ggccaggcct gccagcctgc ggtggagatg gcgctggagg acgttaacag 300 ccgcagagac atcctgccgg actacgagct caagcttatc caccacgaca gcaagtgcga 360 cccagggcaa gccaccaagt acttgtatga actactctac aacgacccca tcaagatcat 420 cctcatgccc ggctgcagct ctgtgtccac actggtagcc gaggctgccc ggatgtggaa 480 ccttattgtg ctctcatatg gctccagctc accagccttg tcaaaccgac agcggtttcc 540 aacgttcttt cggacacatc catccgccac actccacaat cccacccggg tgaaactctt 600 cgaaaagtgg ggctggaaga agattgccac catccagcag actaccgagg tcttcacctc 660 aacactggat gacctggagg agcgagtgaa agaggctggg attgagatca cttttcgaca 720 gagtttcttc tcagatccag ctgtgcctgt taaaaacctg aagcgtcaag atgctcgaat 780 catcgtggga cttttctatg agaccgaagc ccggaaagtt ttttgtgagg tctataagga 840 acggctcttt gggaagaagt atgtctggtt tctcatcggg tggtatgctg acaactggtt 900 caaaacctat gacccgtcaa tcaattgtac agtagaagag atgactgagg cggtggaggg 960 ccatatcacc acggagattg tcatgctgaa ccctgccaac acccgaagca tttccaacat 1020 gacatcacag gaatttgtgg agaaactaac caagcggctg aaaagacacc ctgaggagac 1080 tggaggcttc caggaggcac cactggccta tgatgctatc tgggccttgg ctttggcctt 1140 gaacaagacc tctggaggag gtggccgttc aggagtgcgc ctggaggact ttaactacaa 1200 caaccagacc attacagacc aaatctaccg ggccatgaac tcctcctcct ttgagggtgt 1260 ttctggccac gtggtctttg atgccagcgg ctcccggatg gcatggacgc ttatcgagca 1320 gctacagggc ggcagctaca agaagatcgg ctactacgac agcaccaagg atgatctttc 1380 ctggtccaaa acagacaagt ggatcggagg gtctccccca gccgaccaga ccttggtcat 1440 caagacattc cgtttcctgt cacagaaact ctttatctcc gtctcagttc tctccagcct 1500 gggcattgtt cttgctgttg tctgtctgtc ctttaacatc tacaactccc acgttcgtta 1560 tatccagaac tcccagccca acctgaacaa tctgactgct gtgggctgct cactggcact 1620 agctgctgtc ttcccccttg ggctggatgg ttaccacata gggagaagcc agttcccatt 1680 tgtctgccag gcccgccttt ggctcttggg cttaggcttt agtctgggct atggctctat 1740 gttcaccaag atctggtggg tccacacagt cttcacaaag aaggaggaga agaaggaacg 1800 gaggaagacc ctagagcctt ggaaactgta cgccactgta ggcctgctgg tgggcatgga 1860 tatcctgact cttgccatct ggcagattgt ggaccccttg caccgaacca ttgagacttt 1920 tgccaaggag gaaccaaagg aagacattga tgtctccatt ctgccccagc tggagcactg 1980 cagctccaag aagatgaata catggctcgg cattttctat ggttacaaag ggctgctgct 2040 gctgctggga atctttcttg cttatgagac caaaagtgtg tccactgaaa agatcaatga 2100 ccacagggcc gtgggcatgg ctatctacaa tgttgcggtc ctgtgtctca ttaccgctcc 2160 tgtcaccatg atcctttcca gccagcagga cgcagccttc gcctttgcct ctctggccat 2220 tgtgttctct tcctacatta ctctggttgt gctctttgtg cctaagatgc gcaggttgat 2280 cactcgaggt gaatggcagt ctgaagcaca ggacacaatg aaaacaggat catccaccaa 2340 caacaatgag gaagagaagt cccgactgtt ggagaaggaa aaccgtgaat tggaaaagat 2400 catcgccgag aaagaggagc gtgtctctga actgcgccat cagctccagt ctcggcagca 2460 gatccgctcc cggcgccacc ccccaacacc cccagacccc tctgggggcc ttcccagggg 2520 accctcagag ccccctgacc ggcttagctg tgatgggagt cgagtacatt tgctttacaa 2580 gtgagggtgt atcgagaagg atgaggccag caggggaggg aagggtgtgg ggagtgggtg 2640 gggaactggg aagagggtgg agaacaagct ccaatccccc tcttagaaat acatgtcatt 2700 ctgtgcatct ggggttatct gggtcttcag tactctggga aacagatggt tttctttctt 2760 tccatataat tttatatcac cacttcacag ttttgtttga accctgcttg gagctattca 2820 ctcatgactc cagaggggca tctcgtttgt ctcccatagg ctgtcttgta tagttgttac 2880 tacagcaact cctgtcattt cagcagcagg ggtcttccta cattatcagg gctttctctc 2940 catttctcag cattagaatc tccttccatc atccttctcc tccatgtccc tgtgtcttcc 3000 tctccttaaa tgttgcttct tccaggggac tcaccacaca cacacacaca cacacacaca 3060 cacacacaca cacacacacc atatcctctc ctctcctagg catctggatg tgtttctgtg 3120 caaatatgtt cttttctgaa tgctgctatc acttgtgttt gcatatgctg cacctgtgag 3180 tgcacagtgg ttgtgggtgt gtgcagtggt gtgcttgggt aggcgtgcat gatgtgttga 3240 gcacaccaag ctgtcttcct catgtgcata tgtcatggtt gtctatgttt tacttgtgtg 3300 cctccttgca ttgtgtattt tttctttgca ttttaatatc actatgtagt gtgtgtgtgt 3360 gttgccctga ctcgtgtcag ggcaggcttc ctgtctcagc cttctgagta ttgggattac 3420 agttgtctgc ctagctgatg tcctgtcttc tttcagcaga ggcatgtgca cccaacatgc 3480 acatgattaa gcaggctctt ccccagtacg tgttttctga gccatgcata ccctctcctt 3540 ggccttaggt ttactctcaa gtgttccctc tattctcatg cgtcccactt tgggtctgta 3600 caatcatctc tcagaactac tgcatcttgg ttttcttttc tttgttgtca ttattattat 3660 ttttcagaac taaggggaaa agaaatgggg acaggttgga ggctgtttcc agtggatagt 3720 gggtgcacat ttgatcaaat gaaggcatgg acagatggac tgaccgggcg ggaggcagca 3780 tccctttcac actgtggtgt ctcttggggg aaggatctcc ctgaatctca ataaagcagt 3840 taacagtgtg actcagcacc tcacaaaaaa aaaaaaaaaa aaa 3883 //