Dbfetch
ID BC046832; SV 1; linear; mRNA; STD; MUS; 2785 BP. XX AC BC046832; XX DT 22-MAR-2003 (Rel. 75, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 8) XX DE Mus musculus protein phosphatase 1, catalytic subunit, beta isoform, mRNA DE (cDNA clone MGC:61405 IMAGE:6812937), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2785 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2785 RG NIH MGC Project RA ; RT ; RL Submitted (13-FEB-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 62eab215896414d364921c310538a59b. DR Ensembl-Gn; ENSMUSG00000014956; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029435; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029401; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029351; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029412; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0029133; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0029865; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028543; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0029101; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029250; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0029208; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029335; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0029237; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0029899; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0028268; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028624; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000015100; mus_musculus. DR Ensembl-Tr; ENSMUST00000201360; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0070976; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0071059; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0070960; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0070984; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0070630; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0071464; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0071166; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0070570; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0070707; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0070617; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0070780; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0070642; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0071660; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0070636; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0069787; mus_musculus_wsbeij. DR EuropePMC; PMC1553470; 16822311. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: Plate: Row: Column: 0 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 28173567. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2785 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FW0" FT /clone="MGC:61405 IMAGE:6812937" FT /tissue_type="Brain, mouse, 13.5, 14.5, 16.5, 17.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..2785 FT /gene="Ppp1cb" FT /note="synonym: 1200010B19" FT CDS 88..1071 FT /codon_start=1 FT /gene="Ppp1cb" FT /product="protein phosphatase 1, catalytic subunit, beta FT isoform" FT /db_xref="GOA:P62141" FT /db_xref="InterPro:IPR004843" FT /db_xref="InterPro:IPR006186" FT /db_xref="InterPro:IPR029052" FT /db_xref="InterPro:IPR031675" FT /db_xref="MGI:MGI:104871" FT /db_xref="UniProtKB/Swiss-Prot:P62141" FT /protein_id="AAH46832.1" FT /translation="MADGELNVDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIF FT LSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETIC FT LLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAI FT VDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGV FT SFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGM FT MSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPPRTANPPKKR" FT misc_difference 1751^1752 FT /gene="Ppp1cb" FT /note="1 base in the mouse genome, G, is not found in FT cDNA." FT misc_difference 2337^2338 FT /gene="Ppp1cb" FT /note="1 base in the mouse genome, T, is not found in FT cDNA." FT misc_difference 2477 FT /gene="Ppp1cb" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2763..2785 FT /gene="Ppp1cb" FT /note="polyA tail: 23 bases do not align to the mouse FT genome." XX SQ Sequence 2785 BP; 813 A; 463 C; 564 G; 945 T; 0 other; cgtgactcgt aggtgagaac gccgagccgc cgccgccgcc gagaagccct gttaacgctt 60 tagggaggag agtctggtgc cgacaagatg gcggacgggg agctgaacgt ggacagcctc 120 atcacccgcc tgctggaggt acgaggatgt cgtccaggaa agattgtaca aatgactgaa 180 gcagaagtcc gagggttgtg tatcaagtct cgtgaaatct ttctcagcca gcctattctt 240 ttggaattgg aagcaccact gaagatttgt ggagacattc atggacaata tacagactta 300 ctaagattat ttgaatatgg aggttttcca ccagaagcca actatctttt cttaggagat 360 tatgtggaca gaggaaagca gtctttggaa accatctgtt tgctattggc ttacaaaatc 420 aaatacccgg agaacttctt tcttctaaga ggaaaccatg agtgtgctag catcaatcgc 480 atttatggat tctacgatga gtgtaaacga agatttaata ttaaattgtg gaagacattc 540 actgattgtt ttaactgtct gcctatagct gctattgttg atgagaaaat cttctgttgt 600 catggaggac tgtcaccaga cctacaatct atggaacaga ttcggagaat tatgagaccc 660 actgacgtac ctgatacagg tttgctttgt gacttactgt ggtccgaccc agataaggat 720 gtgcaaggct ggggagaaaa tgaccgtggt gtttctttta cttttggagc tgatgtagtc 780 agtaaatttc tgaatcgtca tgatttagac ttgatttgtc gagctcatca ggtggtggaa 840 gacggatatg aattttttgc taaacgacag ttggtaacct tattttctgc cccaaattac 900 tgtggcgagt ttgacaatgc tggtggtatg atgagtgtgg atgagacttt gatgtgttca 960 ttccagatat tgaaaccatc tgaaaagaaa gctaagtacc agtatggtgg gctgaattct 1020 ggacgtcctg tcactccgcc tcgaacagct aatccaccga agaaaaggtg aagacaggaa 1080 ttctagaaag agaaaccatc agatttgtta aggacatact tcataatata taagtgtgca 1140 ctgtaaaacc atccagccat tcgacaccct ttatgatgtc acacctttaa cttaaggaga 1200 cggtaaagga tcttaaattt ttttctaata gaaagatgtg ctacactgta ttgtaataag 1260 tatactctgt tataatattc aacaaaatta aatccaaatt caaaagtatc cattaaagtt 1320 ctatcttctc atatcacagt ttttaaagtt gaaaagcatc ccagttaaac tagccctgtt 1380 agtgacccag atgaaagcat gaagatccat ctgtgtaatg tggttttagt ggtgcttggt 1440 tgtttcatta ttttgagctt gttttgtttt gtttgttttt gctagaataa tggcatctac 1500 ttttcctatt tttccctaaa catttttaaa agtgaaaatg ggaagagctt taaagacatt 1560 caccaactat tcttttcctt tacttatcta cttaagtaac tgttggatct tactaagaaa 1620 acttacccct cattacagta aaaaggaact ttagaggtcg ataggtttta aaaatataca 1680 aactatctga tccattgatt ttaatcaaac agtttgactg ggcaaacttt gcagctgata 1740 atgagtattt cctttttaca aaattgccac tgatttggat ttgtgcactc taatctttaa 1800 tttattgatg ctctattgtg cagtagcatt tcatttaaga taaggctcat atagtaatat 1860 ccaaaactag ttggtaatgt gattatgtgg tactttggct ttgggttcta attcgcacga 1920 aacacctttt ggcatgctta actttctggt attaccctca cctgcattgg ttttgttttt 1980 tggggttttt gttgtttgtt tgtttttaga ttcacagaac atgagaatcc tttttgacaa 2040 gccttggata gctggctctc ttctttccct ctctctatgt gaaggatgta tttaaatgaa 2100 cgctggtcag tgggacattt gtcagctctg aatattgggt gcttcactaa taattgccat 2160 gtgaatgttg ttttgactgt aaggctatgt cactaaagat ttttactctg cgttttcata 2220 atcaaaggtc atgatgtgta tagacatgct ttgtagtgaa gtatagtagc aataatttct 2280 gtatgtgatc aagagtttat tgcattattt ctttccctgt tctctttttt tttttttaag 2340 ggttagcatt aacaaatgtc aaggagtagc aaagtcaaca aagattttag aaggaggagg 2400 aactaagagc atacacagac ttatgattct ttggatgtga cacttattgg atgtgattct 2460 aaagtctttt attgaatatt gtcaaattcg tacgcttcat aggatggaca taatgtttat 2520 ataatgccct tcttatgtgt taccatagat gtgtgaaacc ttatagcgtc cttgaaagtg 2580 ttaaattgag aactctgtta acattttatg gattgacaca ttatattact gcaagtaaca 2640 tttgattttc agcacagtgc aaaagttctt taaaatgcat atgtcttttt ttttctaatt 2700 ccattttgtt taaagcacat tttaaatgta gttttctcat ttagtaaaag ttgtctaatt 2760 gaaaaaaaaa aaaaaaaaaa aaaaa 2785 //