Dbfetch
ID BC046778; SV 1; linear; mRNA; STD; MUS; 4413 BP. XX AC BC046778; XX DT 17-FEB-2003 (Rel. 74, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus Unc-51 like kinase 2 (C. elegans), mRNA (cDNA clone MGC:61227 DE IMAGE:5709559), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-4413 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4413 RG NIH MGC Project RA ; RT ; RL Submitted (13-FEB-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 608d00ea85c94f1372d26e724b7b0173. DR Ensembl-Gn; ENSMUSG00000004798; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0018447; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0018416; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0018386; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0018387; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0018200; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0018839; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0017757; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0018174; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0018283; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0018274; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0018356; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0018298; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0018880; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0017530; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0017809; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000004920; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0029595; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0029546; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0029520; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0029539; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0029338; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0030038; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0029031; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0029254; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0029399; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0029373; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0029508; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0029359; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0030073; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0028738; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0028828; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: Plate: Row: Column: 0 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31982529. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4413 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_EX0" FT /clone="MGC:61227 IMAGE:5709559" FT /tissue_type="Brain, mouse 15.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..4413 FT /gene="Ulk2" FT /note="synonyms: Unc51.2, mKIAA0623" FT CDS 475..3588 FT /codon_start=1 FT /gene="Ulk2" FT /product="Unc-51 like kinase 2 (C. elegans)" FT /db_xref="GOA:Q9QY01" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR008271" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR016237" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR022708" FT /db_xref="MGI:MGI:1352758" FT /db_xref="UniProtKB/Swiss-Prot:Q9QY01" FT /protein_id="AAH46778.1" FT /translation="MEVVGDFEYCKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKN FT LSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLS FT EDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANRRKSNVSGIRIKIADFGFAR FT YLHSNTMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDL FT RMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQVPVKKSCP FT VPVPVYSGPVPGSSCSSSPSCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQVSKDSAS FT NSSKNSSCDTDDFVLVPHNISSDHSYDMPMGTTARRASNEFFMCGGQCQPTVSPHSETA FT PIPVPTQVRNYQRIEQNLISTASSGTNPHGSPRSAVVRRSNTSPMGFLRVGSCSPVPGD FT TVQTGGRRLSTGSSRPYSPSPLVGTIPEQFSQCCCGHPQGHEARSRHSSGSPVPQTQAP FT QSLLLGARLQSAPTLTDIYQNKQKLRKQHSDPVCPSHAGAGYSYSPQPSRPGSLGTSPT FT KHTGSSPRNSDWFFKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRHGPAESQSKD FT GNDPRECSHCLSVQGSERHRSEQQQSKAVFGRSVSTGKLSEQQVKAPLGGHQGSTDSLN FT TERPMDVAPAGACGVMLALPAGTAASARAVLFTVGSPPHSATAPTCTHMVLRTRTTSVG FT SSSSGGSLCSASGRVCVGSPPGPGLGSSPPGAEGAPSLRYVPYGASPPSLEGLITFEAP FT ELPEETLMEREHTDTLRHLNMMLMFTECVLDLTAVRGGNPELCTSAVSLYQIQESVVVD FT QISQLSKDWGRVEQLVLYMKAAQLLAASLHLAKAQVKSGKLSPSMAVKQVVKNLNERYK FT FCITMCKKLTEKLNRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQSAALDEMFQQTEDI FT VYRYHKAALLLEGLSKILQDPTDVENVHKYKCSIERRLSALCCSTATV" FT misc_difference 4395..4413 FT /gene="Ulk2" FT /note="polyA tail: 19 bases do not align to the mouse FT genome." XX SQ Sequence 4413 BP; 1148 A; 1122 C; 1076 G; 1067 T; 0 other; cgctcccgcg aagcaggcag aagccgccac cgcggctgtg cgggttccag ggcggcggcc 60 gctacacagc agcgccgcgg gcgcaacaag cggaggcagc cgcacctgcg gggatggcgc 120 ggccccggcc ctgcaccgct gtcaggcgcg cgggtagctc cgggtacgcc cagtgacggc 180 ggcggtgccc tcggccgggc agtgcccagg ccgcttggct agagccccgc ggccgacggc 240 ggcccgggcc atgagaagcg accgggccca ggcctcgctg accccggctc cgcgcggcgg 300 cccgtcccgt ttccgctccg gcctctcggc atgagtgtcc atccgggccc ggggccgtgg 360 ctgcccctgt cccgccgccc gcgggcgtgc ttggggccct cgggcccgcg gtgctgatcc 420 cggttctccg ccacgcctgc ccaccctagc gctctatgtc ccgggggcgc ggccatggag 480 gtggtgggcg acttcgagta ctgcaagcgg gacctcgtgg gacacggggc cttcgctgtg 540 gtcttccggg ggcggcaccg ccagaaaact gattgggagg tggctattaa aagtattaat 600 aaaaagaact tgtcaaaatc acaaattctg cttggaaagg aaataaaaat cttaaaggag 660 cttcagcatg aaaacatcgt agcgctctat gatgttcagg aattgcccaa ctctgtcttt 720 ctggtgatgg agtattgcaa tggtggagac ctggcagatt atttgcaagc taaaggaact 780 ctgagtgaag atactatcag agtgtttctc catcagattg cggcagccat gcgaatcctg 840 cacagcaaag ggataatcca cagggatctc aaaccacaga atatcctgtt gtcttatgcc 900 aatcgaagga agtcgaatgt cagtggtatt cgtattaaaa tagctgattt tggtttcgca 960 cggtacctac atagtaacac aatggcagcg acactgtgtg gatccccaat gtacatggct 1020 cccgaggtta ttatgtctca acattatgat gctaaggcag atttatggag cataggaaca 1080 gtgatctatc aatgcctagt tggaaaacca ccttttcagg ctaatagtcc tcaggaccta 1140 aggatgtttt atgaaaaaaa caggagctta atgcctagta ttcccagaga aacatcacct 1200 tacttggcta atctcctttt gggtttgctt cagagaaatc aaaaggatag aatggacttt 1260 gaagcatttt tcagccatcc tttccttgag caagttccag ttaaaaaatc ttgcccagtc 1320 ccagtgcctg tgtattctgg ccctgtccct ggaagctcct gcagcagctc accatcttgt 1380 cgctttgctt ctccaccatc ccttccagat atgcagcata ttcaggaaga aaacttatcc 1440 tccccaccgt tgggtcctcc caactatcta caggtgtcca aagactctgc gagtaatagt 1500 agcaagaact cttcttgtga cacggatgac tttgttttgg ttccacacaa catctcgtca 1560 gaccactcat atgacatgcc aatggggact acggccagac gtgcttcaaa tgaattcttt 1620 atgtgtggag ggcagtgtca acctactgtg tcacctcaca gcgaaacagc cccaattcca 1680 gttcctactc aagtaaggaa ttatcagcgc atagaacaga atcttatatc cactgccagc 1740 tctggcacaa acccacatgg ttctccaaga tctgcagtag tacgaaggtc taataccagc 1800 cccatgggct tcctccgggt tgggtcctgc tcccctgtac caggagacac agtgcagaca 1860 ggaggacgaa gactctctac tggctcttcc aggccttact caccatcccc tttggttggt 1920 accattcctg aacagtttag tcagtgctgc tgtggacatc ctcagggcca tgaagccagg 1980 agtaggcact cctcaggttc tccagtgcca cagacccagg caccacagtc actcttactg 2040 ggtgctagac tgcagagtgc acccaccctc accgatatct atcagaacaa gcagaagctc 2100 agaaagcagc actctgaccc tgtgtgtccg tcccatgctg gagctgggta tagttactca 2160 cctcagccta gtcggcctgg cagccttggg acctctccca ccaagcacac ggggtcctct 2220 ccacggaatt ctgactggtt ctttaaaact cctttaccaa caatcattgg ctctcctact 2280 aagactacag ctcctttcaa aatccctaaa acacaagcat cttctaacct gttagccttg 2340 gttactcgtc atgggcctgc tgaaagccag tccaaagatg ggaatgaccc tcgtgagtgt 2400 tcccactgcc tctcagtaca aggaagcgag aggcatcgat ctgagcagca gcagagcaag 2460 gcagtgtttg gcagatctgt cagtactggg aagttatcag aacaacaagt aaaggcacct 2520 ttaggtggac accagggcag cacggatagt ttaaacacag aacgaccaat ggatgtagct 2580 cctgcaggag cctgtggtgt tatgctggca ttgccagcag gaacagcagc aagcgccaga 2640 gctgtcctct tcaccgtggg gtctcctcca cacagtgcca cagcccccac ttgtactcat 2700 atggtccttc gaacaagaac cacctcagtg gggtccagca gctcaggagg ttccttgtgt 2760 tctgcaagtg gccgagtatg tgtgggctcc cctcctggac cagggttggg ctcttcccca 2820 ccaggagcag agggagctcc cagcctaaga tacgtgcctt atggtgcttc accacccagc 2880 ctagagggtc tcatcacctt tgaagcccct gaactaccag aggagacact gatggagcga 2940 gagcacacag acaccttacg ccatctgaac atgatgttaa tgtttactga gtgtgtgctg 3000 gacctgacgg cagtgagggg tgggaaccct gagctgtgca catctgctgt gtccttgtac 3060 cagattcagg agagtgtagt tgtggaccag atcagccagc taagcaaaga ttgggggcgg 3120 gtggagcagc tggtgttgta catgaaggca gcacagctgc tggcggcttc cctgcatctc 3180 gccaaagctc aggtcaagtc tgggaagctg agcccatcca tggctgtgaa acaagttgtt 3240 aaaaatctga atgaaagata caaattctgc atcaccatgt gcaagaaact tacagaaaag 3300 ctgaatcgct tcttctccga taaacagaga tttattgatg aaatcaacag tgtgactgca 3360 gagaaactca tctataattg tgctgtggaa atggttcaat ctgcagccct ggatgagatg 3420 tttcagcaga ctgaagacat cgtttatcgc taccacaagg cagcccttct tttggaaggc 3480 ttaagtaaga tcctgcagga ccctacagat gttgaaaatg tgcataagta taaatgtagt 3540 attgaaagaa gattgtcagc actctgctgt agcactgcaa ctgtgtgagt agcaggcttg 3600 tctgtggact ggcatggaac aggaggtgat acatttggga ttacatcttg gttctgtcac 3660 ccatcccagg acagtgtggt gactaccaaa gaacaagcag cagcttaaga aggaagaaca 3720 atacaaaact actacatatt gtagaaaacc tgccttattg gagaagtcac tccccctttc 3780 ctttctcttc atagaagcag aacaaaaagt tttccacatg gctcaagtta tttgaacctg 3840 gcaaataata aatgtacctt agaactagca tcataagtac agttattctt gtggataatt 3900 aaacaggaaa caaagtgagt ggcttcattc agctctctga gcaatacatg aaattccgtg 3960 ttttgctaaa gcatacacaa gcaaaagcgt atacagctcg tccagacgat ctgaggtttg 4020 gggtaagttt gtctgaatct gagcctgcat ctttaaacag ctcaggagga ggaatcttaa 4080 gaagaaacaa aaggtgactc ttggatgaat tgtgaaatct tcaacttgat ctaatgtgga 4140 catgatttta atcttccaaa aatctttcat attgcactaa tttattaaaa taactgtgta 4200 ttggattttg caatttaaaa ctaactgagg cacaatggac ttgtttaaat attttacttg 4260 attatataca tgtccttttc agaattcatg tgtaatctcc actgaacttt taaatggttg 4320 gaaattgcgt tcatgtgaac ctttgcattt ttctcacctg ttatcttcac caacagatct 4380 tagtggaatt ttgaaaaaaa aaaaaaaaaa aaa 4413 //