Dbfetch
ID BC043053; SV 1; linear; mRNA; STD; MUS; 2898 BP. XX AC BC043053; XX DT 22-MAR-2003 (Rel. 75, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 11) XX DE Mus musculus valosin containing protein, mRNA (cDNA clone MGC:57954 DE IMAGE:6418662), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2898 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2898 RG NIH MGC Project RA ; RT ; RL Submitted (09-JAN-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e62ef726385d25c5c108c4919d7c0576. DR Ensembl-Gn; ENSMUSG00000028452; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0028196; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0028152; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0028104; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0028172; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027894; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0028613; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0027334; mus_musculus_casteij. DR Ensembl-Gn; MGP_FVBNJ_G0027976; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0028108; mus_musculus_lpj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0028649; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0027060; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0027414; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000030164; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0065244; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0065290; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0065186; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0065220; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0064895; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0065689; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0065206; mus_musculus_casteij. DR Ensembl-Tr; MGP_FVBNJ_T0064901; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0065077; mus_musculus_lpj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0065865; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0064742; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0064104; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: Plate: Row: Column: 0. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2898 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_EW0" FT /clone="MGC:57954 IMAGE:6418662" FT /tissue_type="Brain, mouse 15.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..2898 FT /gene="Vcp" FT /note="synonyms: p97, CDC48, 3110001E05" FT CDS 234..2654 FT /codon_start=1 FT /gene="Vcp" FT /product="valosin containing protein" FT /db_xref="GOA:Q01853" FT /db_xref="InterPro:IPR003338" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR003960" FT /db_xref="InterPro:IPR004201" FT /db_xref="InterPro:IPR005938" FT /db_xref="InterPro:IPR009010" FT /db_xref="InterPro:IPR015415" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029067" FT /db_xref="InterPro:IPR041569" FT /db_xref="MGI:MGI:99919" FT /db_xref="PDB:1E32" FT /db_xref="PDB:1R7R" FT /db_xref="PDB:1S3S" FT /db_xref="PDB:2PJH" FT /db_xref="PDB:3CF0" FT /db_xref="PDB:3CF1" FT /db_xref="PDB:3CF2" FT /db_xref="PDB:3CF3" FT /db_xref="UniProtKB/Swiss-Prot:Q01853" FT /protein_id="AAH43053.1" FT /translation="MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPK FT MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP FT CPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF FT KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVEL FT PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE FT SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH FT VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV FT ANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ FT SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFY FT GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF FT DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR FT PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA FT CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIR FT KYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG" FT misc_difference 2863..2898 FT /gene="Vcp" FT /note="polyA tail: 36 bases do not align to the mouse FT genome." XX SQ Sequence 2898 BP; 762 A; 658 C; 789 G; 689 T; 0 other; cgtcgtttga ttagtcgctg cccccctcgc ggattaggag ctagcgtctc ccgcccgccc 60 gcctgccgcc ccggtgcccc tgggaggaag cgagagggag gctgccagag ggtttgtcac 120 tgctgttgct cctccgcctc agcgagtcca gccccggcct agtcggtcgc ctgcctttct 180 catagccgtt accctcaggc cgccacagcc gccgaccggg agaggcgcgc gccatggcct 240 ctggagccga ttcaaaaggt gatgatttat caacagccat tctcaaacag aagaaccgac 300 ccaatcggtt aattgttgat gaagccatca atgaagataa cagcgtggtg tccttgtccc 360 agcccaagat ggatgaactg cagttgttcc gaggtgacac ggtgttgcta aaaggaaaga 420 aaagacggga agctgtatgc attgttcttt ctgatgacac gtgttctgat gagaagattc 480 gaatgaatag agttgttcgg aataacctcc gagttcgcct aggagatgtc atcagcatcc 540 agccatgccc tgatgtaaag tatggcaaac gtatccacgt tctacccatc gatgacacag 600 tggaaggcat cactggcaat ctctttgagg tataccttaa gccgtacttc ctggaagctt 660 atcggcccat ccgtaaagga gatatttttc ttgtccgggg tgggatgcgt gctgtggagt 720 tcaaagttgt agagacagat cccagccctt actgtattgt tgctccagac acagtgatcc 780 actgtgaggg ggagccaatc aagcgagagg atgaggagga atccttgaat gaagtaggct 840 atgatgacat cggtggttgc aggaagcagc tagctcagat aaaggagatg gtggagctgc 900 cactgagaca tcctgcgctc tttaaggcga ttggtgtaaa gcctcctcgg ggaatcttgt 960 tgtatgggcc tcctgggaca gggaagaccc tgattgctcg agctgtggca aatgaaactg 1020 gagccttctt ctttctgatc aatggtcctg aaatcatgag caaattggct ggtgagtctg 1080 agagcaacct tcgtaaagcc tttgaggaag ctgaaaagaa tgctcctgct atcatcttca 1140 tcgatgagct tgatgccatt gcacccaaaa gagagaaaac tcatggggaa gtggagcgtc 1200 gcatcgtgtc tcagttgttg accctcatgg atggcctaaa gcagagagca catgtgatag 1260 ttatggcagc aaccaataga cccaacagca ttgacccagc cctacggcga tttggtcgct 1320 ttgacagaga ggtagatatt ggaatacctg atgctacagg acgtttggag attcttcaga 1380 tccataccaa gaacatgaaa ctggcagatg atgtggactt ggaacaggta gccaatgaga 1440 ctcatggtca tgttggtgct gatttggcag ccctatgttc agaggctgct ctgcaggcca 1500 tccggaaaaa aatggacctc attgacctag aagatgagac cattgatgct gaggtcatga 1560 attccctggc agttactatg gatgacttcc ggtgggcttt gagtcaaagc aacccatcag 1620 cacttcggga aactgtggta gaggtgccac aagtaacctg ggaagatatt ggaggcctgg 1680 aggatgtcaa acgtgagctt caggagttgg ttcagtatcc tgtggaacat ccagacaaat 1740 tcctcaaatt tggcatgact ccctccaaag gcgttctttt ctatggacct cctggctgtg 1800 ggaaaacctt actggctaaa gccattgcta atgaatgcca ggccaacttc atctccatca 1860 agggtcctga gctgcttacc atgtggtttg gggaatctga ggccaatgtc cgggaaattt 1920 ttgacaaggc acggcaagct gccccctgtg tactcttctt tgatgagtta gattcaattg 1980 ccaaggctcg aggtggtaat attggagatg gtggtggagc tgctgaccga gtcatcaatc 2040 agatcctgac agaaatggat ggcatgtcta caaaaaagaa tgtgtttatc attggagcta 2100 ccaacaggcc tgacatcatt gatcctgcta tcctaagacc tggccgtcta gatcagctca 2160 tttatatccc acttcctgat gagaagtccc gtgttgccat cctaaaagcc aatctgcgaa 2220 agtccccagt tgccaaggat gtggatttgg agttcctggc taagatgact aatggctttt 2280 ctggagctga tttgacagaa atttgccaac gggcttgtaa actggccatt cgtgaatcta 2340 ttgagagtga gattaggcga gaacgagaga ggcagacaaa tccatcggct atggaggtag 2400 aagaggacga tccagtgcct gagatccgca gagatcactt tgaggaagcc atgcgttttg 2460 cccgacgttc tgtcagcgat aatgacattc ggaagtatga aatgttcgcc cagacactgc 2520 agcagagtcg aggttttggc agcttcagat tcccttcagg gaaccagggt ggagctggtc 2580 ccagccaggg cagtggaggt ggcacaggtg gcagtgtgta cacagaagac aatgacgatg 2640 acctgtatgg ctaagtgatg tgccagcatg cagcgagctg gcctggctgg accttgttcc 2700 ctgggggagg gggcgcttgc ccaagaggga ccaggggtgt gcccatggcc tgttccattc 2760 ctcagtctga acagttcagc cccagtcaga ctctggacag gggtttcctg ttgcaaaaaa 2820 aaaaaattac aaaagcgata aaataaaagt gattttcatt tgaaaaaaaa aaaaaaaaaa 2880 aaaaaaaaaa aaaaaaaa 2898 //