Dbfetch
ID BC042570; SV 1; linear; mRNA; STD; MUS; 4783 BP. XX AC BC042570; XX DT 07-JAN-2003 (Rel. 74, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus protein phosphatase 1F (PP2C domain containing), mRNA (cDNA DE clone MGC:25978 IMAGE:4241448), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-4783 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4783 RG NIH MGC Project RA ; RT ; RL Submitted (02-JAN-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; a91e3abe136c6bd2a621e121bb448713. DR Ensembl-Gn; ENSMUSG00000026181; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022565; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022526; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022503; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022529; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022296; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0022980; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0021824; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022267; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022397; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022373; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022464; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022394; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0022991; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021567; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0021871; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000027373; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0043358; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0043325; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0043299; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0043307; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0043050; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0043797; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0043152; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0042963; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0043119; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0043072; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0043183; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0043053; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0043833; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0042738; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0042435; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 31 Row: g Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31341186. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4783 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Kid14" FT /clone="MGC:25978 IMAGE:4241448" FT /tissue_type="Kidney, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..4783 FT /gene="Ppm1f" FT /note="synonyms: CaMKPase, MGC25978, mKIAA0015" FT misc_difference 1..2 FT /gene="Ppm1f" FT /note="2 bases at the 5' end do not align to the mouse FT genome." FT CDS 71..1429 FT /codon_start=1 FT /gene="Ppm1f" FT /product="protein phosphatase 1F (PP2C domain containing)" FT /db_xref="GOA:Q8CGA0" FT /db_xref="InterPro:IPR000222" FT /db_xref="InterPro:IPR001932" FT /db_xref="InterPro:IPR015655" FT /db_xref="InterPro:IPR036457" FT /db_xref="MGI:MGI:1918464" FT /db_xref="UniProtKB/Swiss-Prot:Q8CGA0" FT /protein_id="AAH42570.1" FT /translation="MASGAAQNSSQMACDSEIPGFLDAFLQDFPAPLSLESPLPWKVPG FT TVLSQEEVEAELIELALGFLGSRNAPPSFAVAVTHEAISQLLQTDLSEFKRLPEQEEEE FT EEEEEEKALVTLLDAKGLARSFFNCLWKVCSQWQKQVPLTAQAPQWQWLVSIHAIRNTR FT RKMEDRHVSLPAFNHLFGLSDSVHRAYFAVFDGHGGVDAARYASVHVHTNASHQPELRT FT NPAAALKEAFRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQGR FT VVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADA FT ASRELTGSEDYLLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARDRGS FT HDNITVMVVFLREPLELLEGGVQGTGDAQADVGSQDLSTGLSELEISNTSQRS" FT misc_difference 4770..4783 FT /gene="Ppm1f" FT /note="polyA tail: 14 bases do not align to the mouse FT genome." XX SQ Sequence 4783 BP; 1115 A; 1204 C; 1321 G; 1143 T; 0 other; ggcagagtga agacttgact ggagactgtc tcaccccagc ctagctgcaa acccccggaa 60 tgcactgggc atggcctctg gagccgcaca gaacagcagc cagatggcct gtgacagtga 120 gatcccaggc ttcctggacg cattcctcca agacttccca gccccactga gcctggagag 180 ccctttgcca tggaaggtcc cagggacagt cctgagccag gaagaagtgg aggctgagct 240 gattgagctg gcattgggct tcctgggcag caggaacgct cccccatcgt ttgctgtggc 300 tgtgacccac gaggcaattt cccagctgct gcagacagac ctttctgaat ttaagaggtt 360 gcctgaacaa gaggaggagg aggaagagga ggaagaagag aaagccctcg tgaccttact 420 agatgccaaa ggcctggcac ggagcttctt caactgcctt tggaaagtat gtagccagtg 480 gcagaagcag gtgccgttga ctgcccaggc ccctcagtgg cagtggctgg tctctatcca 540 tgccatccgg aacacacgac gcaagatgga ggaccgacac gtgtcccttc ctgctttcaa 600 ccatctcttc ggcttgtctg actctgtgca ccgtgcctac tttgctgtgt ttgatggtca 660 tggaggcgtg gatgcagcaa ggtatgcctc tgtccacgtg cataccaatg cttctcacca 720 gccagagctg cgcacaaacc ctgcagcagc tctcaaagaa gccttccggc tcaccgatga 780 gatgtttctc cagaaagcca agcgagagcg actgcagagc ggtaccacgg gtgtgtgtgc 840 actcatcgcg ggagcagccc tgcatgttgc ctggcttgga gactcccagg tcatcctggt 900 acagcaagga cgggtagtga agctgatgga gccgcacaaa ccggagcgac aggatgagaa 960 agcacgaatt gaagccctgg gtggctttgt ttctctcatg gactgttgga gagtcaacgg 1020 gaccctggca gtgtctagag ccattgggga tgtcttccag aagccctatg tgtctgggga 1080 ggccgatgca gcatccagag agctaacggg ctcagaggac tacctgttgc ttgcttgtga 1140 tggtttcttc gatgttgtcc cccaccatga agtcacgggt ctcgtccatg gccacttgct 1200 caggcacaag ggcaatggga tgcgtattgc tgaggagctg gtggctgtgg cccgtgaccg 1260 gggctcccat gacaacatta cagtcatggt ggtcttcctt agggagcccc tggagctgct 1320 agagggtgga gtccagggga caggggatgc ccaggcagat gtaggaagcc aggacttgtc 1380 cactggcctc tcagaacttg agatcagtaa tacctcacag agaagctaag tggtccaggc 1440 ctccaggccc catccggact ctccctctgc cctcgtgatc ctccccttca aagaccttag 1500 atccaaaagg tatagtgggc aggggtgcac actctcacag cattccctta gcaccccagc 1560 ccttcatgtt gcctaccaca gcctgtcctc atggctgcag aactgcagta ggcagctagt 1620 ggatctcaga aggaaacata ggaaaatggc ctcaccgaag agcagatggc tgaggtgatc 1680 agggccggac aggtctggga acagaaacca caggcacctg ctggtagcct aaccaaaaac 1740 acaggtcagg tcttggagga ccctcacaca gatcctggaa tgagatctgc agccaggtgt 1800 ccagcccagg cttgtggctt ctcattgtac ccaaggctgg gagggtttgg tctgtactaa 1860 cacacaagct cgcagtcctg cttgactgct ggcttcccaa agaggagaca ttggtcttgc 1920 tgggaggcac agcaggagag tgacccactg ccactgcact ctaactgagt actaaggcca 1980 ctagggcttt ctagacctcg ctttcccctt gagcttcctg gggaggtgaa gtgaggtgtg 2040 tgtgtgtgtg tgtgtctttg tgtgcttaga tttattgcag ggaaaggtct aatccagaat 2100 cagtattcag gctttgtcat gttgtatcag tgccaaggtg accctcaagg tcatgtaact 2160 taagcaaagc ttagcattta ttttattcct gaaaacttaa gtattttact tttttgtgtg 2220 ttcgtggaga catttgcagt attaatgatt ttatttttcc taaatcggga tggaaacaaa 2280 cttttccagg ttatgttaat aagccactta agtgccttaa acagctttgg tgtagatgag 2340 aattgctggg tccgtcatgg atcctgatag gcagacgtgt tgaggttctc aaagaggctg 2400 catttgttgt gggaaggcac actttcagcc agcactcttt ctgggaaagt ccttttgtgc 2460 gtctgggcac ctcagaactt ccttgaagtg atgggtaaag gctgtgacta tgggcacctg 2520 gggtgacact ggcctccttg tccaccttgg agtctggctg gttcccagct gagagaacct 2580 tactgctctt ggctagaaga ttgacacact caatctctct tgaaactctc ttaagtgtgt 2640 ttgcagttat gttgattgag ttgttgaaga cagtgcttag gtgaggaact tgggcaagcc 2700 cagcagtcca ccatctttct cctgtgactt gtgtcctaac ctgctagact ctgtcctgac 2760 ctgagcagca tgaaagacct ccacatccct agagcagtga tggatacagt caggcaagga 2820 aaccaagtga gggttggggg ggataccaag aatagaagga ctaggaggcc ctcaacaagg 2880 gccaagcgag tcaaggctgc tctctgcaga cactggcagg tccagagaat aatggtggct 2940 tagcagaggc tcagggaagg atcagtagga agaagggtgg ctgtgaggta ggtccccatg 3000 aaggagacat agttcacctg tagagtgaaa gccctagcaa gacttgcaga gctttgttca 3060 ttgcacctaa gccctctttg aaaagaagca agggagctca tacttattcc tctgaggcaa 3120 gttcacttcc agcagtagga gagcgagcca gccaaatgca gctgggcacc cacctgtatg 3180 cttgccattt acccattccc acagcaggga tggaagagct ggggccatgt agttgattcc 3240 ttgatcaagt ctcctgatag gaacgtgatc actcagatgg ctgcccacct aatagctagg 3300 tattgcttaa cttgaaggcc tgctgccttc cggggggggg gggggtgtca gaatccagca 3360 tcctcagtgc catctcaaca cagggtgtgg ttgttggtcc agcctgcctg tagcagtgac 3420 cttcatagag ggagataaat tgattttggt tttctcccat ttttgctaac ctgatcattg 3480 ctggtaagag tggaatttgg gcctccttgg tggtctggat tcatactcgc atgtaaagat 3540 gtgccaaata tcaaggcctc agtgtaaagg gaagcccctt tcccaggctt gtctgagtgc 3600 ctcccccacc cttccccctg tctggcaatg gtctgggacc aacatcaggc actgctccat 3660 cctgatctag tggccaagga agaccacatt ctcctactgt tgagggctgg ccttgagcga 3720 gttcctaggt acagagaact ctttttgtct ggactggagt tgccagtacc aagcctacaa 3780 gacttgttgg ccacctcctc ctcagagtct cttcccaaaa gaatccccta gccaggataa 3840 tgggtggctt agtagaggct cagggaagga acagggagaa gggtggctgt gagctcaagt 3900 ccccctcttt gccaccatca cattgtgtga gcggaaccag tcactgcacc tctcaggcct 3960 cagggaaagg catggagggc atgcatagca ttaccaggag ctgccagagc acgggagccc 4020 atcctccacc agcagcagag aggggttaag tattattagt gtctattctt aaaattaagt 4080 gggctggaac agagctgagt tacaggcgcc agtgtcttac acagatacaa aagctgaagc 4140 cgtcagcctg cctttgcagg tacagctgcc tcccaaccaa ggcctggagg cgttaagagg 4200 tgggagggca caagcaggct ttcaggagtg ttgaagcaag ggatctgcag catagctttg 4260 ggcgtctcca gaactcatgg tgagggaggc accaacacct agaggtctta aaagccctgc 4320 attcaccatg atctgtctgc ccctgccctt ttgggttctt ctgcatgcag tgcccccctc 4380 tcctgatgct aagttttggc atgggtgtcc tggctacctc aactgtattc tcaaggccag 4440 gaggatggct ctggccatac ttacggaagc caggccaatt tgtgtgaagc aagctgggct 4500 tctggtttga ttcagcttct gtagcctcca gggaccatcc tctggagtct tgtgctttca 4560 ctggactctt cagcttcacc aaacacacca agctttgcca tttacatgcc atgtgggcct 4620 tgccaagggt tatttcaggg gtcttcctgg gagtcttgtt ctaagacacc gtgtttcttt 4680 agtcttaggg acaactccca aggtgatgag ctcataggac gtcttcccat ggggccctgt 4740 actggtgtca ataaaccata tattcaagaa aaaaaaaaaa aaa 4783 //