Dbfetch
ID BC038158; SV 1; linear; mRNA; STD; MUS; 1080 BP. XX AC BC038158; XX DT 24-SEP-2002 (Rel. 73, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus ribonuclease H2, large subunit, mRNA (cDNA clone MGC:48163 DE IMAGE:1493985), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1080 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1080 RG NIH MGC Project RA ; RT ; RL Submitted (20-SEP-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 15d169d71eff48b267c112afbd4b233f. DR Ensembl-Gn; ENSMUSG00000052926; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0033882; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0033865; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0033791; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0033858; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0033568; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0034378; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0032898; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0033544; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0033697; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0033645; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0033789; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0033687; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0034395; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0032602; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0033011; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000109736; mus_musculus. DR Ensembl-Tr; ENSMUST00000109738; mus_musculus. DR Ensembl-Tr; ENSMUST00000147812; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0089767; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0089849; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0089788; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0089784; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0089353; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0090306; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0089902; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0089288; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0089491; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0089337; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0089527; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0089358; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0090609; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0089327; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0088399; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Marcello Bento Soares, Ph.D. CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 83 Row: i Column: 16. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1080 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="Soares_mammary_gland_NbMMG" FT /clone="MGC:48163 IMAGE:1493985" FT /tissue_type="Mammary gland" FT /note="Vector: pT7T3-Pac" FT /db_xref="taxon:10090" FT gene 1..1080 FT /gene="Rnaseh2a" FT /note="synonyms: RNHL, RNHIA, RNASEHI" FT misc_difference 17 FT /gene="Rnaseh2a" FT /note="'G' in cDNA is 'A' in the mouse genome." FT CDS 100..1005 FT /codon_start=1 FT /gene="Rnaseh2a" FT /product="ribonuclease H2, large subunit" FT /db_xref="GOA:Q9CWY8" FT /db_xref="InterPro:IPR001352" FT /db_xref="InterPro:IPR004649" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR023160" FT /db_xref="InterPro:IPR024567" FT /db_xref="InterPro:IPR036397" FT /db_xref="MGI:MGI:1916974" FT /db_xref="PDB:3KIO" FT /db_xref="PDB:3P5J" FT /db_xref="UniProtKB/Swiss-Prot:Q9CWY8" FT /protein_id="AAH38158.1" FT /translation="MDLSELERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPM FT VYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLIST FT SMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEV FT TVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLR FT KHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEEDPERPGKITSYFSQGPQTC FT RPQAPHRYFQERGLEAASSL" FT misc_difference 285 FT /gene="Rnaseh2a" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 465 FT /gene="Rnaseh2a" FT /note="'A' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 792 FT /gene="Rnaseh2a" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1014 FT /gene="Rnaseh2a" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 1062..1080 FT /gene="Rnaseh2a" FT /note="polyA tail: 19 bases do not align to the mouse FT genome." XX SQ Sequence 1080 BP; 264 A; 279 C; 308 G; 229 T; 0 other; gtcagcatca agagccgctg cagttttcgc ggaaaacgcg cgctgggacc tgcgcttgca 60 gtgttgtttt ctacaattgt tggctgtcgc agaggcagca tggatctcag cgagctggag 120 agggacaata cgggtcgttg tcgtctgagt tctcctgtac ctgctgtgtg tctcaaggag 180 ccgtgcgttc tgggcgtgga tgaagcgggc cgaggccctg tgcttggtcc catggtctac 240 gccatctgtt actgccccct gtctcgcttg gcagatctgg aggctctgaa agtggcagac 300 tctaagacct tgacagagaa cgagcgggag aggctctttg cgaaaatgga ggaggatgga 360 gactttgtgg gttgggcttt ggacgtcctg tctccaaacc tgatctctac cagcatgctt 420 gggcgagtca agtacaacct caactccctg tcacacgata cagcagcggg gctgatacag 480 tacgcactgg accagaatgt gaatgtcact caggtatttg tggacactgt aggaatgcca 540 gagacatacc aggctcgatt acaacagcac tttcccggga tagaggtgac agtcaaggcc 600 aaagctgact ccctgttccc tgtggtcagt gctgccagca tctttgccaa ggtggcccga 660 gacaaggctg tgaagaactg gcagtttgtg gaaaatttac aggatctgga ctccgattat 720 ggctcaggct atcccaatga tcccaagacc aaagcctggc tgaggaaaca tgtggaccct 780 gtgtttggct tcccccagtt tgtacggttc agttggagca cagcccaggc catcctggag 840 aaggaggcag aagatgtcat ttgggaggac tcagaagctg aggaggatcc tgaaagaccg 900 ggaaaaatca cctcctactt cagccagggc ccgcagacct gccgccctca ggccccccac 960 agatacttcc aggagcgagg cctggaggca gccagcagcc tctaggagcc cacatgtgca 1020 ccacctgccc ttctaaccca ggaataaaag ctgttcaaga aaaaaaaaaa aaaaaaaaaa 1080 //