Dbfetch
ID BC034575; SV 1; linear; mRNA; STD; HUM; 3587 BP. XX AC BC034575; XX DT 27-JUL-2002 (Rel. 72, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Homo sapiens ATPase type 13A2, mRNA (cDNA clone IMAGE:5139467), partial DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3587 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3587 RA Director MGC Project; RT ; RL Submitted (24-JUL-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Cancer RL Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, RL Bethesda, MD 20892-2590, USA XX DR MD5; 19614e264c077581e5fd669b29b31514. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 52 Row: h Column: 14 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis. CC Differences found between this sequence and the human genome (build CC 35) are described in misc_difference features below and these CC differences were also compared to chimpanzee genomic seqeunces CC available as of Sep 03, 03. XX FH Key Location/Qualifiers FH FT source 1..3587 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_12" FT /clone="IMAGE:5139467" FT /tissue_type="Cervix, carcinoma" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:9606" FT gene <1..3587 FT /gene="ATP13A2" FT /note="synonym: HSA9947" FT CDS <1..3268 FT /codon_start=2 FT /gene="ATP13A2" FT /product="ATP13A2 protein" FT /db_xref="GOA:Q8N4D4" FT /db_xref="H-InvDB:HIT000093478.13" FT /db_xref="InterPro:IPR001757" FT /db_xref="InterPro:IPR006544" FT /db_xref="InterPro:IPR008250" FT /db_xref="InterPro:IPR018303" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023298" FT /db_xref="InterPro:IPR023299" FT /db_xref="InterPro:IPR036412" FT /db_xref="UniProtKB/TrEMBL:Q8N4D4" FT /protein_id="AAH34575.1" FT /translation="RDKEDSSWQLFTVQVQTEAIGEGSLEPSPQSQAEDGRSQAAVGAV FT PEGAWKDTAQLHKSEEAVSVGQKRVLRYYLFQGQRYIWIETQQAFYQVSLLDHGRSCDD FT VHRSRHGLSLQDQMVRKAIYGPNVISIPVKSYPQLLVDEALNPYYGFQAFSIALWLADH FT YYWYALCIFLISSISICLSLYKTRKQSQTLRDMVKLSMRVCVCRPGGEEEWVDSSELVP FT GDCLVLPQEGGLMPCDAALVAGECMVNESSLTGESIPVLKTALPEGLGPYCAETHRRHT FT LFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILHPRPINFKFYKHSMKFVAAL FT SVLALLGTIYSIFILYRNRVPLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRRQ FT GIFCIHPLRINLGGKLQLVCFDKTGTLTEDGLDVMGVVPLKGQAFLPLVPEPRRLPVGP FT LLRALATCHALSRLQDTPVGDPMDLKMVESTGWVLEEEPAADSAFGTQVLAVMRPPLWE FT PQLQAMEEPPVPVSVLHRFPFSSALQRMSVVVAWPGATQPEAYVKGSPELVAGLCNPET FT VPTDFAQMLQSYTAAGYRVVALASKPLPTVPSLEAAQQLTRDTVEGDLSLLGLLVMRNL FT LKPQTTPVIQALRRTRIRAVMVTGDNLQTAVTVARGCGMVAPQEHLIIVHATHPERGQP FT ASLEFLPMESPTAVNGVKDPDQAASYTVEPDPRSRHLALSGPTFGIIVKHFPKLLPKVL FT VQGTVFARMAPEQKTELVCELQKLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVS FT PFTSSMASIECVPMVIREGRCSLDTSFSVFKYMALYSLTQFISVLILYTINTNLGDLQF FT LAIDLVITTTVAVLMSRTGPALVLGRVRPPGALLSVPVLSSLLLQMVLVTGVQLGGYFL FT TLAQPWFVPLNRTVAAPDNLPNYENTVVFSLSSFQYLILAAAVSKGAPFRRPLYTNVPF FT LVALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLLLGLVTLNFVGAFMLESVLDQ FT CLPACLRRLRPKRASKKRFKQLERELAEQPWPPLPAGPLR" FT misc_difference 2515 FT /gene="ATP13A2" FT /note="'A' in cDNA is 'G' in the human genome; no amino FT acid change. The chimpanzee genome agrees with the human FT genomic sequence and not the cDNA." FT misc_difference 3532..3587 FT /gene="ATP13A2" FT /note="polyA tail: 56 bases do not align to the human FT genome." XX SQ Sequence 3587 BP; 686 A; 1182 C; 1060 G; 659 T; 0 other; aagagacaaa gaggatagtt cctggcagct cttcactgtc caggtgcaga ctgaggccat 60 cggcgagggc agcctggagc cgtccccaca gtcccaggca gaggatggcc ggagccaggc 120 ggcagttggg gcggtaccag agggtgcctg gaaggatacg gcccagctcc acaagagcga 180 ggaggcggtg agtgtcggac agaagcgggt gctgcggtat tacctcttcc agggccagcg 240 ctatatctgg atcgagaccc agcaagcctt ctaccaggtc agcctcctgg accatggccg 300 ctcttgtgac gacgtccacc gctcccgcca tggcctcagc ctccaggacc aaatggtgag 360 gaaggccatt tacggcccca acgtgatcag cataccggtc aagtcctacc cccagctgct 420 ggtggacgag gcactgaacc cctactatgg gttccaggcc ttcagcatcg cgctgtggct 480 ggctgaccac tactactggt acgccctgtg catcttcctc atttcctcca tctccatctg 540 cctgtcgctg tacaagacca gaaagcaaag ccagactcta agggacatgg tcaagttgtc 600 catgcgggtg tgcgtgtgcc ggccaggggg agaggaagag tgggtggact ccagtgagct 660 agtgcccgga gactgcctgg tgctgcccca ggagggtggg ctgatgccct gtgatgccgc 720 cctggtggcc ggcgagtgca tggtgaatga gagctctctg acaggagaga gcattccagt 780 gctgaagacg gcactgccgg aggggctggg gccctactgt gcagagacac accggcggca 840 cacactcttc tgcgggaccc tcatcttgca ggcccgggcc tatgtgggac cgcacgtcct 900 ggcagtggtg acccgcacag ggttctgcac ggcaaaaggg ggcctggtga gctccatctt 960 gcacccccgg cccatcaact tcaagttcta taaacacagc atgaagtttg tggctgccct 1020 ctctgtcctg gctctcctcg gcaccatcta cagcatcttc atcctctacc gaaaccgggt 1080 gcctctgaat gagattgtaa tccgggctct cgacctggtg accgtggtgg tgccacctgc 1140 cctgcctgct gccatgactg tgtgcacgct ctacgcccag agccgactgc ggagacaggg 1200 cattttctgc atccacccac tgcgcatcaa cctggggggc aagctgcagc tggtgtgttt 1260 cgacaagacg ggcaccctca ctgaggacgg cttagacgtg atgggggtgg tgcccctgaa 1320 ggggcaggca ttcctgcccc tggtcccaga gcctcgccgc ctgcctgtgg ggcccctgct 1380 ccgagcactg gccacctgcc atgccctcag ccggctccag gacacccccg tgggcgaccc 1440 catggacttg aagatggtgg agtctactgg ctgggtcctg gaggaagagc cggctgcaga 1500 ctcagcattt gggacccagg tcttggcagt gatgagaccc ccactttggg agccccagct 1560 gcaggcaatg gaggagcccc cggtgccagt cagcgtcctc caccgcttcc ccttctcttc 1620 ggctctgcag cgcatgagtg tggtggtggc gtggccaggg gccactcagc ccgaggccta 1680 cgtcaaaggc tccccggagc tggtggcagg gctctgcaac cccgagacag tgcccaccga 1740 cttcgcccag atgctgcaga gctatacagc tgctggctac cgtgtcgtgg ccctggccag 1800 caagccactg cccactgtgc ccagcctgga ggcagcccag caactgacga gggacactgt 1860 ggaaggagac ctgagcctcc tggggctgct ggtcatgagg aacctactga agccgcagac 1920 aacgccagtt atccaggctc tgcgaaggac ccgcatccgc gccgtcatgg tgacagggga 1980 caacctgcag acagcggtga ctgtggcccg gggctgtggc atggtggccc cccaggagca 2040 tctgatcatc gtccacgcca cccaccctga gcggggtcag cctgcctctc tcgagttcct 2100 gccgatggag tcccccacag ccgtgaatgg cgttaaggat cctgaccagg ctgcaagcta 2160 caccgtggag ccagaccccc gatccaggca cctggccctc agcgggccca cctttggtat 2220 cattgtgaag cacttcccca agctgctgcc caaggtcctg gtccagggca ctgtctttgc 2280 ccgcatggcc cctgagcaga agacagagct ggtgtgcgag ctacagaagc ttcagtactg 2340 cgtgggcatg tgcggagacg gcgccaatga ctgtggggcc ctgaaggcgg ctgatgtcgg 2400 catctcgctg tcccaggcag aagcctcagt ggtctcaccc ttcacctcga gcatggccag 2460 tattgagtgc gtgcccatgg tcatcaggga ggggcgctgt tcccttgaca cttcattcag 2520 cgtcttcaag tacatggctc tgtacagcct gacccagttc atctccgtcc tgatcctcta 2580 cacgatcaac accaacctgg gtgacctgca gttcctggcc atcgacctgg tcatcaccac 2640 cacagtggca gtgctcatga gccgcacggg gccagcgctg gtcctgggac gggtgcggcc 2700 accgggggcg ctgctcagcg tgcccgtgct cagcagcctg ctgctgcaga tggtcctggt 2760 gaccggcgtg cagctagggg gctacttcct gaccctggcc cagccatggt tcgtgcctct 2820 gaacaggaca gtggccgcac cagacaacct gcccaactac gagaacaccg tggtcttctc 2880 tctgtccagc ttccagtacc tcatcctggc tgcagccgtg tccaaggggg cgcccttccg 2940 ccggccgctc tacaccaatg tgcccttcct ggtggccctg gcgctcctga gctccgtcct 3000 ggtgggcctt gtcctggtcc ccggcctcct gcaggggccg ctggcgctga ggaacatcac 3060 tgacaccggc ttcaagctgc tgctgctggg tctggtcacc ctcaacttcg tgggggcctt 3120 catgctggag agcgtgctag accagtgcct ccccgcctgc ctgcgccgcc tccggcccaa 3180 gcgggcctcc aagaagcgct tcaagcagct ggaacgagag ctggccgagc agccctggcc 3240 gccgctgccc gccggccccc tgaggtagtg caggcccacg ggcaccccag acactggaac 3300 tccctgcctc tgagccacca actggacccc tctccagcaa caccaccgcc accacctccc 3360 acatccctga ggttggcgac tgtctacact cctcccccga gaccaccccc accctgggga 3420 agcgttgact actgtcccct accttggacc atcccgcgta ggggtggcag cccccagctc 3480 ccctcagtgc tgctgtcagt gtagcaaata aagtcatgat attttcctgg ccaaaaaaaa 3540 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa 3587 //