Dbfetch
ID BC033475; SV 1; linear; mRNA; STD; MUS; 2746 BP. XX AC BC033475; XX DT 24-SEP-2002 (Rel. 73, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36341 DE IMAGE:4953334), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2746 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2746 RG NIH MGC Project RA ; RT ; RL Submitted (26-JUN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e32321773266808ede0c362b076190ec. DR Ensembl-Gn; ENSMUSG00000041459; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029129; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029094; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029042; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029110; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0028831; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0029559; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028244; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0028793; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0028942; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0028906; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029032; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0028933; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0029591; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0027964; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028324; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000084125; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0069263; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0069327; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0069233; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0069244; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0068913; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0069740; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0069381; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0068853; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0068989; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0068889; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0069076; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0068906; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0069924; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0068877; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0068077; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 60 Row: n Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31543841. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:36341 IMAGE:4953334" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2746 FT /gene="Tardbp" FT CDS 89..1333 FT /codon_start=1 FT /gene="Tardbp" FT /product="TAR DNA binding protein" FT /db_xref="GOA:Q921F2" FT /db_xref="InterPro:IPR000504" FT /db_xref="InterPro:IPR012677" FT /db_xref="InterPro:IPR035979" FT /db_xref="InterPro:IPR041105" FT /db_xref="MGI:MGI:2387629" FT /db_xref="PDB:3D2W" FT /db_xref="UniProtKB/Swiss-Prot:Q921F2" FT /protein_id="AAH33475.1" FT /translation="MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRN FT PVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTS FT DLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS FT QRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI FT PKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG FT GFGNQGGFGNSRGGGAGLGNNQGGNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGML FT ASQQNQSGPSGNNQSQGSMQREPNQAFGSGNNSYSGSNSGAPLGWGSASNAGSGSGFNG FT GFGSSMDSKSSGWGM" FT misc_difference 2730..2746 FT /gene="Tardbp" FT /note="polyA tail: 17 bases do not align to the mouse FT genome." XX SQ Sequence 2746 BP; 747 A; 465 C; 710 G; 824 T; 0 other; gcggtagcgc ggctgttgtc ggattccttc ccgtctgtgc ttcctccttg tgcttcctag 60 cagtggccta gcggagattt aagcaaagat gtctgaatat attcgggtaa cagaagatga 120 gaacgatgaa cccattgaaa taccatcaga agacgatggg acggtgttgc tgtccacagt 180 tacagcccag tttccagggg catgcggcct gcgctaccgg aatcccgtgt ctcagtgtat 240 gagaggagtc cgactggtgg aaggaattct gcatgcccca gatgctggct ggggcaatct 300 ggtatatgtt gtcaactatc ccaaagataa caaaaggaaa atggatgaga cagatgcttc 360 ctctgcagtg aaagtgaaaa gagcagtcca gaaaacatct gacctcatag tgttgggtct 420 cccctggaaa acaactgagc aggatctgaa agactatttc agtacttttg gagaggttct 480 tatggttcag gtcaagaaag atcttaaaac tggtcactcg aaagggtttg gctttgttcg 540 atttacagaa tatgaaaccc aagtgaaagt aatgtcacaa cgacatatga tagatgggcg 600 atggtgtgac tgtaaacttc ccaactctaa gcaaagccca gacgagcctt tgagaagcag 660 aaaggtgttt gttggacgtt gtacagagga catgactgct gaagagcttc agcagttttt 720 ctgtcagtat ggagaagtgg tagatgtctt cattcccaaa ccattcagag cttttgcctt 780 cgtcaccttt gcagatgata aggttgccca gtctctttgt ggagaggatt tgatcattaa 840 aggaatcagc gtgcatatat ccaatgctga acctaagcat aatagcaata gacagttaga 900 aagaagtgga agatttggtg gtaatccagg tggctttggg aatcagggtg ggtttggtaa 960 cagtagaggg ggtggagctg gcttgggaaa taaccagggt ggtaatatgg gtggagggat 1020 gaactttggt gcttttagca ttaacccagc gatgatggct gcggctcagg cagcgttgca 1080 gagcagttgg ggtatgatgg gcatgttagc cagccagcag aaccagtcgg gcccatctgg 1140 gaataaccaa agccagggca gcatgcagag ggaaccaaat caggcttttg gttctggaaa 1200 taattcctac agtggttcta attctggtgc cccccttggt tgggggtcag catcaaatgc 1260 aggatcgggc agtggtttta atgggggctt tggctcgagc atggattcta agtcttctgg 1320 ctggggaatg taggtggtgg ggggtggtta gtaggttggt tattaggtta ggtagattta 1380 gaatggtggg attcaaattt ttctaaactc atggtaagta tattgtaaaa tacatatgta 1440 ctaaaatttt cagattggtt tgttcagtgt ggagtatatt cagcagtatt tttgacattt 1500 ttctttagaa aaaaagaggg gaaagctaaa tgaattttat aagttttgtt atataaaggg 1560 ttaaaatact gagtgggtga aagtgaactg ctgtttgcct aattggtaaa ccaacactac 1620 aattgatctc agaaggtttc tctgtaatat tctatcattg aaattgttaa tgaattcttt 1680 gcatgttcag agtagaaacc attggttaga actacattct tttctcctta ttttaatttg 1740 aatcccaccc tatgaatttt ttccttagga aaatctccat ttgggagatc atgatgtcat 1800 ggtgtttgat tcttttggtt ttgtttttaa cacttgtctt ccttcatata cgaaagtaca 1860 atatgaagcc ttcatttaat ctctgcagtt catctcattt caaatgttta tggaagaagc 1920 acttcattga aagtagtgct gtaaatattc tgccatagga atacttctgt ctacatgctt 1980 tctcatccaa gaattcgtca tcacgctgca caggctgcgt ctttgacggt gggtgttcca 2040 tttttatccg ctactcttta tttcatggag tcgtatcaac gctatgaacg caaggctgtg 2100 atatggaacc agaaggctgt ttgaactttt gaaaccttgt gtgggattga tggtggtgcc 2160 gaggcatgaa aggctagtat gagcgagaaa aggagagcgc gtgcagagac ttggtggtgg 2220 aaaatggata ttttttaact tggagagatg tgtcactcaa tcctgtggct ttggtgagag 2280 agtgtgcaga gagcaatgat agcaaataac gtacgaatgt tttacatcaa aggacatcca 2340 catcagttgg aagactttga gttttgttct taggaaaccc actttagttg aatgtgttaa 2400 gtgaaatact tgtacttccc tccccctctg tcaactgctg tgaatgctgt atggtgtgtg 2460 ttctcctctg ttactgatct ggaagtgtgg gaacgtgaac tgaagctgat gggctgcgaa 2520 catggactga gcttgtggtg tgctttgcag gagaacttgg aagcagagtt caccagtgag 2580 ctcaggtgtc tcaaagaagg gtggaagttc tcatgtctgt tagctattca taagaatgct 2640 gtttgctgca gttctgtgtc ctgtgcttgg atgctttttt ataagagttg tcattgttgg 2700 aaattcttaa ataaaactga tttaaataaa aaaaaaaaaa aaaaaa 2746 //