Dbfetch
ID BC033394; SV 1; linear; mRNA; STD; MUS; 2872 BP. XX AC BC033394; XX DT 24-SEP-2002 (Rel. 73, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus glycoprotein m6a, mRNA (cDNA clone MGC:39028 IMAGE:5364685), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2872 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2872 RG NIH MGC Project RA ; RT ; RL Submitted (26-JUN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; bfe6fd585c50d54429209897015c8ddf. DR Ensembl-Gn; ENSMUSG00000031517; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0033615; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0033597; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0033522; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0033594; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0033303; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0034110; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0032629; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0033282; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0033435; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0033376; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0033523; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0033420; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0034128; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0032337; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0032745; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000033915; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0088875; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0088963; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0088889; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0088906; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0088464; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0089426; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0089009; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0088416; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0088608; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0088448; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0088636; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0088488; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0089717; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0088429; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0087508; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: The Cepko Laboratory CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 53 Row: h Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981997. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2872 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_94" FT /clone="MGC:39028 IMAGE:5364685" FT /tissue_type="Eye, retina, mouse strain C57Bl\6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2872 FT /gene="Gpm6a" FT /note="synonyms: MGC38999, M6A" FT CDS 79..915 FT /codon_start=1 FT /gene="Gpm6a" FT /product="glycoprotein m6a" FT /db_xref="GOA:P35802" FT /db_xref="InterPro:IPR001614" FT /db_xref="InterPro:IPR018237" FT /db_xref="MGI:MGI:107671" FT /db_xref="UniProtKB/Swiss-Prot:P35802" FT /protein_id="AAH33394.1" FT /translation="MEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCG FT CGHEALSGTVNILQTYFELARTAGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGF FT FTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGVTAFTSLPVYMYFNVWTICR FT NTTLVEGANLCLDLRQFGIVTIGEEKKICTASENFLRMCESTELNMTFHLFIVALAGAG FT AAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT" FT misc_difference 2859..2872 FT /gene="Gpm6a" FT /note="polyA tail: 14 bases do not align to the mouse FT genome." XX SQ Sequence 2872 BP; 802 A; 505 C; 578 G; 987 T; 0 other; aaaggcacac gcttttttga catctaattg agcttttgac taataccgtg cgccagattc 60 tcctgaagaa aggtagccat ggaagagaat atggaagaag gacagacaca gaaagggtgc 120 ttcgagtgct gcattaaatg cctgggaggt attccctatg cttctctgat tgcaaccatc 180 ctgctgtatg caggcgttgc cctgttctgt ggctgtggcc atgaagccct ttctggaaca 240 gtcaacattc tgcagaccta ctttgagttg gcaaggactg ctggagacac actggatgtt 300 ttcactatga ttgacatctt taagtatgtg atctatggca ttgcggctgc tttctttgtc 360 tatggcattt tactgatggt agaaggtttc ttcacaactg gggctatcaa agatctctat 420 ggagacttca aaatcaccac ctgtggcaga tgtgtgagcg cttggtttat catgctgaca 480 tacctcttca tgttggcctg gctgggagtc acagctttca cctcactgcc cgtgtacatg 540 tatttcaatg tgtggaccat ctgccggaac accactctag tggagggagc aaatctctgc 600 ttggatctgc gtcagtttgg gattgtgaca attggagagg aaaagaaaat ttgtactgcc 660 tctgagaact tcctgaggat gtgtgaatct actgagctga atatgacctt ccacttgttc 720 attgtggcac ttgctggagc tggagcagca gttattgcta tggtccacta cctgatggtt 780 ctgtctgcca actgggccta tgtgaaagat gcctgccgca tgcagaagta cgaagacatc 840 aagtcaaagg aagagcagga gctgcacgac atccattcta ctcgctccaa agagcggctc 900 aatgcgtaca cataaatacg cttctctgtt ccttaccact cgaaggcatt ggtgtttcat 960 taagggccat ccaaccatcc aacctgtgaa gagcaaaacg agaatgctac tcatcaaaga 1020 tgcgcagggt gactaatgaa tcacctgagt ataactcttt gctgttgagc attccatctt 1080 ctaatttgtt aaattggaat gaccaaatct cctctacaag ctcctattca gtcttttttt 1140 ttaacctctc aaattgattt agttcttctg tatgatcaaa gatattaaca ttgtccaacg 1200 caaatctttg tttgattttt aatcacctcc cacatatcac acataacact ttttgcattg 1260 tttcttatgt tttggaagag aaaatagctt tttttatact ttttagtttt gatttcagta 1320 actagtttaa ctacaggtaa ccttcaaagg gaccgttgta cattatgaaa gagagacaga 1380 gatggtatca tgatgactcc gcttgatatg ggaatcagtc tggagagatc agtggccaca 1440 cggctatcgg ccatggttaa tgttttcatc catctaaggt gcaatttcaa aatttctaag 1500 ggtaggttaa aaaaaagtgc ttcttatctt tgttaacatt gtattctttt ttcttgatgt 1560 tcgtaaaagg tatttctctg attactcatg tttatgttgt gagcatgtag aaacagtaat 1620 gctaatgcat ggccagttgc cttcctaaga ttgtgacacc aggcttacct tttcaagttt 1680 agtatagaaa caattatcat ggaaataact actgtggact gttggagagt gatctttttt 1740 tgtgatttat gcagtggctg gattggatct tttaatatgc taatgtggaa aattaattac 1800 ctttatgaag gtggtatctt aaacataagc acactaaacc ctcaagactt gttttaccca 1860 cttaaaactt ttaacggatt gcacctctgt aagctatttc ttaaaatgtg tatgatatat 1920 ttgaaaagac ttccattaat ataatagctt tgcttgcagc cttccaatct atgttggttt 1980 acctgtagtg tttctaaagg gtggtcagag gccactagag aatgtattgt ttgggagtgt 2040 agtgatatat attttgtgtt tttatttcaa gtaagtcatt ttaaccaaat gttcattcac 2100 attcatttat aagaagtacc tatatcagac aaattttaaa agaaaaacaa tcagtattaa 2160 tggaccaaat ttcgtgtttg ttttaacctt gactctcttt tgattctttc taatgctaca 2220 agaatgctgt gaaatgtcat ttaaaataat gatgtagcct gacaagaaat tttgtcagtg 2280 tataaaccta ggtagtattg tgcactgatt tgaccattgt gaattcctcc ttcagtgtaa 2340 gtgcattccc aataaaattt attgagtgaa acaatctttg tacaactact agtcatgcat 2400 catcagtaat tttacaagtt cttgtagtag gtagggggta ttactagcgt ttctgtggca 2460 tgattatgca ttctgtaata ttaatttggg ggtccttttg ctttttaaca cttagattat 2520 cttaatggtt caacattttt ctgatatatg cagtattaaa gatattgagc aaaagtatta 2580 atgggcttct ttaaattcta tattatagtg tttcagttct gtgtctacag tgtgtgatga 2640 tttttaaaac tgtcttttaa atttatgtaa tgatgttgac attttgactt ttatttctgg 2700 ttttagagtt tgtattttca tggagtgctt tgtagcaggc attacaagta atctgttttg 2760 tacataaatg tgccaacagc ttgatggtgg cgtttttgaa atgtagaaca aagtgcttgc 2820 aaaatgtaat aaatacactt gtgtactttg tgtacttaaa aaaaaaaaaa aa 2872 //