Dbfetch
ID BC031196; SV 1; linear; mRNA; STD; MUS; 3203 BP. XX AC BC031196; XX DT 14-JUN-2002 (Rel. 72, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus gamma-aminobutyric acid (GABA-A) receptor, pi, mRNA (cDNA DE clone MGC:37685 IMAGE:5059564), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3203 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3203 RG NIH MGC Project RA ; RT ; RL Submitted (03-JUN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 3a401c79e60d38ba43a94b3890e12cad. DR Ensembl-Gn; ENSMUSG00000020159; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0018145; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0018118; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0018082; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0018087; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0017900; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0018541; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0017464; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0017873; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0017983; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0017977; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0018055; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0018001; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0018580; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0017245; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0017513; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000020366; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0028516; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0028483; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0028441; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0028462; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0028263; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0028961; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0027910; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0028183; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0028318; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0028299; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0028429; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0028283; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0028993; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0027615; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0027763; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 58 Row: n Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981871. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3203 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N-3" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam2" FT /clone="MGC:37685 IMAGE:5059564" FT /tissue_type="Mammary tumor. MMTV-LTR/INT3 model. 5 month FT old mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3203 FT /gene="Gabrp" FT /note="synonym: MGC38123" FT CDS 173..1495 FT /codon_start=1 FT /gene="Gabrp" FT /product="gamma-aminobutyric acid (GABA-A) receptor, pi" FT /db_xref="GOA:Q8QZW7" FT /db_xref="InterPro:IPR006028" FT /db_xref="InterPro:IPR006029" FT /db_xref="InterPro:IPR006201" FT /db_xref="InterPro:IPR006202" FT /db_xref="InterPro:IPR008100" FT /db_xref="InterPro:IPR018000" FT /db_xref="InterPro:IPR036719" FT /db_xref="InterPro:IPR036734" FT /db_xref="MGI:MGI:2387597" FT /db_xref="UniProtKB/Swiss-Prot:Q8QZW7" FT /protein_id="AAH31196.1" FT /translation="MSYSLYLAFLCLSLLTQRTCIQGNQVNVEVSRSDKLSLPGFENLT FT AGYNKFLRPNFGGDPVRIALTLDIASISSISESNMDYTATIYLRQRWTDPRLVFEGNKS FT FTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVTCNMD FT LSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSVRGLENLRLAQYTIQQYFTLVTVS FT QQETGNYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLDSVPARTCIGVTT FT VLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHYSSLQQMAVKDR FT GPAKDSEEVNITNIINSSISSFKRKISFASIEISGDNVNYSDLTMKASDKFKFVFREKI FT SRIIDYFTIQNPSNVDRYSKLLFPLIFMLANVFYWAYYMYF" FT misc_difference 325 FT /gene="Gabrp" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 2889 FT /gene="Gabrp" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2900 FT /gene="Gabrp" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 3017 FT /gene="Gabrp" FT /note="'C' in cDNA is 'A' in the mouse genome." FT misc_difference 3019..3026 FT /gene="Gabrp" FT /note="8 bases in cDNA are not found in the mouse genome." FT misc_difference 3161 FT /gene="Gabrp" FT /note="'A' in cDNA is 'T' in the mouse genome." FT misc_difference 3187..3203 FT /gene="Gabrp" FT /note="polyA tail: 17 bases do not align to the mouse FT genome." XX SQ Sequence 3203 BP; 847 A; 762 C; 670 G; 924 T; 0 other; ctgggtgcat acttaacacc caaagagtca ggactgagat gaaaaggacc ctggagaccc 60 aaaagagtat gctctgtgtg agagtcctgc ctgagatctg gaaacacctg ctgtaacagc 120 tgcctggtga ttcctccttc aacctttttg tgtgtgaatc agctccttca acatgagcta 180 cagcctctat ttggccttcc tgtgtctgag tctcctcact cagaggacgt gcatccaggg 240 gaaccaggtc aatgtggagg tcagcagaag tgacaagctt tccttacctg gctttgagaa 300 cctcactgca ggatataaca aatttctcag gcccaatttc ggtggtgacc cagttcggat 360 agcactgact ctggacatcg ccagcatctc tagcatctca gagagtaaca tggactacac 420 agccactata tacctccggc agcgttggac agacccacgg ctagtgttcg aaggcaacaa 480 gagctttact ctagatgccc gccttgtgga gttcctctgg gtgccagaca cttacattgt 540 agagtccaag aagtccttcc tccatgaagt cacagtggga aacaggctca tccgcctctt 600 ctccaacggc acagtcctgt acgcacttag aatcacaaca acagttacat gtaacatgga 660 tctgtctaaa taccccatgg acacacagac ctgcaagctg cagctagaaa gttggggata 720 cgatggcaat gatgtggagt tctcctggct gagagggaat gactcggtgc gtggacttga 780 aaacctgcgc cttgctcagt acacaatcca acagtatttc accctggtca ccgtatccca 840 gcaggagaca ggaaactata cgagattggt tttgcaattt gagcttcgga ggaacgtcct 900 gtatttcatt ctggaaacct atgtcccttc caccttcctg gtggtgttat cctgggtctc 960 cttttggatc tccctcgatt cagttcctgc gagaacctgc attggagtga caacggtgtt 1020 atccatgaca acgctgatga tcggctcccg cacatcccta cccaacacca actgcttcat 1080 aaaggccatc gatgtgtacc taggcatctg cttcagcttc gtgtttgggg ccttactgga 1140 gtatgcagtt gctcactaca gctccttaca gcagatggca gtcaaagata gggggccagc 1200 gaaggactcg gaagaagtca atatcaccaa catcatcaac agctccatct ccagctttaa 1260 acggaagatt agctttgcca gcattgaaat ctctggtgac aatgtcaact atagtgactt 1320 gacaatgaaa gccagcgaca agtttaagtt tgtcttccga gagaagatca gcagaatcat 1380 tgattatttc acaattcaaa accccagcaa tgtggatcga tactccaaac tactatttcc 1440 tttgattttt atgttggcca atgtatttta ctgggcatac tacatgtatt tttgagacgc 1500 cattgaactc ttgcatcaca taatgaggtt aagggtattc tagaacatgt gtgtgcactt 1560 cagcttagaa agctacaaat gggctaatgt aacaattatt ctaagttgtg tagaagccct 1620 agtgtgacca gattctataa tagagtcatt ataaggcaac ccttttcttc ttcaattttg 1680 gacagaacac cccctccaca cacatacaca gaacccaaga ctgcgaacct actcagggct 1740 atttgctctc tggatccctg gtctgcattc actccataaa aatgtgggaa gatgattaca 1800 tatattaagg ggtttatttt ctaaagaatt catagtgcca ctgattacat ctctgtggcc 1860 cttataatat gctctcttgc ctatttaaac accagtgttt tctaattttt gtttttcctt 1920 gaaatatgaa atgtgggttt gcgtcaattc attggtggtt accttgcctc atcaacctaa 1980 taccagatgg gttcttagtg ttatttaata ccacagaaga attgtcccca aattctaata 2040 catcctatta ttcacaaatc agatgtaaat gaataaaatt agtggatcaa taaactaaaa 2100 gaaaaaaaca taaatccttt ggggtccagg gcttcatgcc gtttttccac gtatcttatt 2160 attttgtttt tatacacctt agtcctaacc tatgtaaaaa ccccttttcc acatcaggaa 2220 aacgggagga agttttgaaa cttgttctgg attcctaata cagaatgcgt ccatgaagac 2280 ttgctgagtc aagtgtacta gctagccacc tttactcaca tactggctag gaaccaagta 2340 gaccagagag tgctctgtca acctgtcctc tctgctgacc tgttgaccaa gatgctgggg 2400 aacattttgc cggtggcaaa ggccctgcct ccttcaaaga ggagctttta tccctgtgct 2460 ccagtgacta ggcaggagtg atgtctatta gataagaagc ggcactactg ggacacaagt 2520 agcttatctt aaatagttac cttttcccaa cctttctagc tggactactt tgagtggatt 2580 accctgcctg agcagcagac cactggccct gactggttcc gactgttctg aacgatggaa 2640 agacacattg cacaacccac gtgagctgtc ttttctgagt tcagccaggg tcaccctgac 2700 ctaggagctc ttgtgtgccc tctctctctc ttgctccacg ggaatcgcct atataaggtt 2760 ccaatgcagc ctcaattgtt tcaaagactc ttgctgtctt caggtctttc ccttcctttt 2820 ctaatgaacc ctcagctttc cctgtccttt ctacaacaaa ccggggctgt agatgttctt 2880 tcctttcatg tccttcacct acgggccctc cttttcatca gcatggctct gcccatcgtt 2940 ccgtttctgt gagcttgagt gcctggcgct taacagatgt ttctatttta ggattcgctt 3000 tgttcattgg agtacactct taagctaggt gtagttgcgc cattagagtt cttagtagaa 3060 tctctttgta ttttgtatct gtcatataca ttcctaaggg gaggggctag gggaggggaa 3120 gtgtggttga gtgagtaggt catacctgtg catttttttt aaaaaataaa aatgtttaaa 3180 atataaaaaa aaaaaaaaaa aaa 3203 //