Dbfetch
ID BC031184; SV 1; linear; mRNA; STD; MUS; 1677 BP. XX AC BC031184; XX DT 14-JUN-2002 (Rel. 72, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus epidermal growth factor-containing fibulin-like extracellular DE matrix protein 1, mRNA (cDNA clone MGC:37612 IMAGE:4989603), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1677 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1677 RG NIH MGC Project RA ; RT ; RL Submitted (03-JUN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; c963994406504c5ed701c371816cdf78. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 58 Row: g Column: 11 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 22122482. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1677 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Co24" FT /clone="MGC:37612 IMAGE:4989603" FT /tissue_type="Colon, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1677 FT /gene="Efemp1" FT /note="synonym: MGC37612" FT CDS 69..1232 FT /codon_start=1 FT /gene="Efemp1" FT /product="epidermal growth factor-containing fibulin-like FT extracellular matrix protein 1" FT /db_xref="GOA:Q8K0J4" FT /db_xref="InterPro:IPR000152" FT /db_xref="InterPro:IPR000742" FT /db_xref="InterPro:IPR001881" FT /db_xref="InterPro:IPR009030" FT /db_xref="InterPro:IPR013032" FT /db_xref="InterPro:IPR018097" FT /db_xref="InterPro:IPR026823" FT /db_xref="InterPro:IPR032973" FT /db_xref="MGI:MGI:1339998" FT /db_xref="UniProtKB/TrEMBL:Q8K0J4" FT /protein_id="AAH31184.1" FT /translation="MATSGVVPGGGFMASATAVAGPEVQTGRNNFVIRRNPADPQRIPS FT NPSHRIQCAAGYEQSEHNVCQDIDECTSGTHNCRTDQVCINLRGSFTCQCLPGYQKRGE FT QCVDIDECTVPPYCHQRCVNTPGSFYCQCSPGFQLAANNYTCVDINECDASNQCAQQCY FT NILGSFICQCNQGYELSSDRLNCEDIDECRTSSYLCQYQCVNEPGKFSCMCPQGYEVVR FT SRTCQDINECETTNECREDEMCWNYHGGFRCYPRNPCQDHYVLTSENRCVCPVSNTMCR FT ELPQSIVYKYMSIRSDRSVPSDIFQIQATMIYANTINTFRIKSGNENGEFYLRQTSPVS FT AMLVLVKSLSGPREYIVDLEMLTVSSIGTFRTSSVLRLTIIVGPFSF" FT misc_difference 1652..1677 FT /gene="Efemp1" FT /note="polyA tail: 26 bases do not align to the mouse FT genome." XX SQ Sequence 1677 BP; 528 A; 361 C; 358 G; 430 T; 0 other; ctcagcaaga aacaccagct gcagaagctt cgtcaggtgc caccactggg actgtagctg 60 ccaggagcat ggcaaccagt ggtgtggtgc ctgggggtgg cttcatggcc agtgctactg 120 cagttgctgg ccctgaagtt caaactggcc gaaataactt tgtcatccga agaaacccag 180 ctgaccctca gcgcatccct tccaaccctt cccaccggat ccagtgtgca gcaggctatg 240 aacagagtga gcataatgtg tgccaagata ttgatgagtg cacctcaggg actcacaatt 300 gtagaacgga ccaagtatgc atcaatttac gaggttcctt cacatgtcag tgtcttcctg 360 ggtatcagaa gcgaggtgaa cagtgtgtgg atatagatga atgcacagtg cctccatatt 420 gccaccaaag atgtgttaac acacctggtt ccttctactg ccagtgcagt ccagggtttc 480 agctggcagc aaacaactac acttgtgtgg atataaatga atgtgatgcc agcaaccagt 540 gtgctcaaca atgctacaac attcttggct cattcatctg tcagtgtaat caaggatatg 600 aactaagcag tgacagactc aactgtgaag acatcgacga atgcagaacc tcaagctacc 660 tatgccaata tcaatgtgtc aatgaacctg ggaagttctc atgtatgtgc ccacagggtt 720 acgaagtggt gcgcagcaga acctgtcagg atataaatga atgtgagacc accaatgaat 780 gccgagaaga tgagatgtgc tggaattacc atgggggctt ccgctgttac ccacgaaacc 840 catgtcaaga tcactatgtt ctaacatcag aaaaccgatg tgtttgccca gtctcaaaca 900 ctatgtgccg ggagctgccc cagtccattg tctacaaata catgagcatc cgatctgaca 960 ggtccgtgcc ttcagacatc ttccagatac aggcaacaat gatttatgca aacaccatta 1020 atacttttcg gattaaatct ggaaatgaaa atggagagtt ctacctacga caaacaagcc 1080 ctgtgagtgc aatgctggtg cttgtgaagt ctctatcagg accaagagaa tacatcgtgg 1140 acctggagat gctgacagtc agtagtatag gaaccttccg cacaagctct gtgttaagat 1200 tgacaataat agtggggcca ttttcatttt agccttttac tcatataaag cctactacaa 1260 gcatttaaat cagccaaaca atatcattac cttaaaactc tattttattt atagctatat 1320 ctagtacatg tatattcaaa tagctagact atggtaagaa gtgggcattt aatccataag 1380 agtcaatgtt tatcgttatc actgtgtgta aattagacct ttatccaaca ttaagagagc 1440 taatcatata ttatctagtg aaacttggat tctttcctgc aaaatgggac caagcaagga 1500 tactgttctg tgttgtatag agaaatatac acctccacag accatcccgt gagaattggc 1560 catcttagca tgaagatcaa gaaggagggt ttttttaact gctttgtaag aaaatggaaa 1620 aaagtcaata aagatatatt tctttagaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa 1677 //