Dbfetch
ID BC024621; SV 2; linear; mRNA; STD; MUS; 899 BP. XX AC BC024621; XX DT 14-MAR-2002 (Rel. 71, Created) DT 14-JUL-2017 (Rel. 133, Last updated, Version 16) XX DE Mus musculus gamma-aminobutyric acid receptor associated protein, mRNA DE (cDNA clone MGC:25654 IMAGE:4459651), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-899 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-899 RG NIH MGC Project RA ; RT ; RL Submitted (01-MAR-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX RN [3] RC Sequence update by database staff to remove vector contamination RP 1-899 RG NIH MGC Project RA ; RT ; RL Submitted (10-JUL-2017) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 03d0873c4055b707d0e8d1573eb2f6d3. DR Ensembl-Gn; ENSMUSG00000018567; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0018575; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0018543; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0018512; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0018515; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0018328; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0018966; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0017883; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0018300; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0018410; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0018400; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0018480; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0018423; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0019008; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0017657; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0017937; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000018711; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0030169; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0030108; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0030082; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0030101; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0029897; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0030603; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0029597; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0029814; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0029952; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0029943; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0030067; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0029927; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0030631; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0029314; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0029389; mus_musculus_wsbeij. XX CC On Jul 10, 2017 this sequence version replaced BC024621.1. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 31 Row: h Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 40254379. XX FH Key Location/Qualifiers FH FT source 1..899 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="MGC:25654 IMAGE:4459651" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..899 FT /gene="Gabarap" FT CDS 102..455 FT /codon_start=1 FT /gene="Gabarap" FT /product="gamma-aminobutyric acid receptor associated FT protein" FT /db_xref="GOA:Q9DCD6" FT /db_xref="InterPro:IPR004241" FT /db_xref="InterPro:IPR029071" FT /db_xref="MGI:MGI:1861742" FT /db_xref="PDB:5YIR" FT /db_xref="PDB:6A9X" FT /db_xref="UniProtKB/Swiss-Prot:Q9DCD6" FT /protein_id="AAH24621.1" FT /translation="MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLD FT KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFF FT LYIAYSDESVYGL" XX SQ Sequence 899 BP; 217 A; 246 C; 205 G; 231 T; 0 other; gccaagtctg ttcgtcgaag ccgcctccgc cgccgccccc tgtcccggcc ccccccctgg 60 gttccctcag cccagctcgg tccagcccgg ttctcgggag aatgaagttc gtgtacaaag 120 aggagcatcc gttcgagaaa cgccgctctg agggcgagaa aatccgaaag aaatacccag 180 accgggtccc ggtgatagtg gaaaaagccc ccaaagctcg gataggagac ctggacaaaa 240 agaaatacct ggtgccttct gatcttacag ttggtcaatt ctacttcttg atccggaagc 300 gaattcatct ccgtgctgaa gatgccttgt ttttctttgt caacaatgtc attccaccca 360 ccagtgccac gatgggtcag ctgtaccagg aacaccatga agaagacttc tttctataca 420 ttgcctacag tgatgaaagc gtctatggtc tgtgaagctg ctgtacctga ggtggggggt 480 tccattctac gaagagaggt ggcgctcctt ccttgacatc cagttcctcc ttcaggctca 540 aacaccacct cctttcttca ggacctgcac ttaatgtttg aggctgtctc tccagtccct 600 ctcagcagga ggggtaatgg tagatacagc ctccatacat ctctttctcc ccttgtttac 660 cctccattcc cactctgatt tagacttctt gattgtcgat ctctgtcaca tccgatgatt 720 gttttggttt ctattccctt tctaactgcc catcgggctc agaaccccaa taatcccttc 780 ctttcactat cttctttttg gggggtaggt ggaagggatt gacattggat gggggaggta 840 ggaggcacat caataaaaag gaaaccaccg agctgaattg aaaaaaaaaa aaaaaaaaa 899 //