Dbfetch
ID BC023060; SV 1; linear; mRNA; STD; MUS; 1004 BP. XX AC BC023060; XX DT 08-FEB-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 6) XX DE Mus musculus epidermal growth factor-containing fibulin-like extracellular DE matrix protein 1, mRNA (cDNA clone IMAGE:5357328), partial cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1004 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1004 RA Strausberg R.; RT ; RL Submitted (04-FEB-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Cancer RL Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, RL Bethesda, MD 20892-2590, USA XX DR MD5; c9b8c3dd2053fa4cea18016937f5d842. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: The Cepko Laboratory CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 54 Row: f Column: 17 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis. XX FH Key Location/Qualifiers FH FT source 1..1004 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_94" FT /clone="IMAGE:5357328" FT /tissue_type="Eye, retina, mouse strain C57Bl\6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT CDS <1..567 FT /codon_start=1 FT /gene="Efemp1" FT /product="Efemp1 protein" FT /db_xref="GOA:Q8R1U8" FT /db_xref="InterPro:IPR001881" FT /db_xref="InterPro:IPR013032" FT /db_xref="InterPro:IPR018097" FT /db_xref="MGI:MGI:1339998" FT /db_xref="UniProtKB/TrEMBL:Q8R1U8" FT /protein_id="AAH23060.1" FT /translation="QYQCVNEPGKFSCMCPQGYEVVRSRTCQDINECETTNECREDEMC FT WNYHGGFRCYPRNPCQDHYVLTSENRCVCPVSNTMCRELPQSIVYKYMSIRSDRSVPSD FT IFQIQATMIYANTINTFRIKSGNENGEFYLRQTSPVSAMLVLVKSLSGPREYIVDLEML FT TVSSIGTFRTSSVLRLTIIVGPFSF" XX SQ Sequence 1004 BP; 335 A; 194 C; 198 G; 277 T; 0 other; caatatcaat gtgtcaatga acctgggaag ttctcatgta tgtgcccaca gggttacgaa 60 gtggtgcgca gcagaacctg tcaggatata aatgaatgtg agaccaccaa tgaatgccga 120 gaagatgaga tgtgctggaa ttaccatggg ggcttccgct gttacccacg aaacccatgt 180 caagatcact atgttctaac atcagaaaac cgatgtgttt gcccagtctc aaacactatg 240 tgccgggagc tgccccagtc cattgtctac aaatacatga gcatccgatc tgacaggtcc 300 gtgccttcag acatcttcca gatacaggca acaatgattt atgcaaacac cattaatact 360 tttcggatta aatctggaaa tgaaaatgga gagttctacc tacgacaaac aagccctgtg 420 agtgcaatgc tggtgcttgt gaagtctcta tcaggaccaa gagaatacat cgtggacctg 480 gagatgctga cagtcagtag tataggaacc ttccgcacaa gctctgtgtt aagattgaca 540 ataatagtgg ggccattttc attttagcct tttactcata taaagcctac tacaagcatt 600 taaatcagcc aaacaatatc attaccttaa aactctattt tatttatagc tatatctagt 660 acatgtatat tcaaatagct agactatggt aagaagtggg catttaatcc ataagagtca 720 atgtttatcg ttatcactgt gtgtaaatta gacctttatc caacattaag agagctaatc 780 atatattatc tagtgaaact tggattcttt cctgcaaaat gggaccaagc aaggatactg 840 ttctgtgttg tatagagaaa tatacacctc cacagaccat cccgtgagaa ttggccatct 900 tagcatgaag atcaagaagg agggtttttt taactgcttt gtaagaaaat ggaaaaaagt 960 caataaagat atatttcttt agaaaatgag aaaaaaaaaa aaaa 1004 //