Dbfetch
ID BC021647; SV 1; linear; mRNA; STD; MUS; 2234 BP. XX AC BC021647; XX DT 22-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus solute carrier family 22 (organic anion transporter), member DE 6, mRNA (cDNA clone MGC:13982 IMAGE:4163278), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2234 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2234 RG NIH MGC Project RA ; RT ; RL Submitted (14-JAN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; efc4ba9e8210a6c6ee8cbabe057c39a7. DR Ensembl-Gn; ENSMUSG00000024650; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0024801; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0024769; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0024744; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0024769; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0024535; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0025216; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0024008; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0024509; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0024636; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0024603; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0024723; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0024630; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0025265; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0023753; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0024070; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000010250; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0050949; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0050933; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0050888; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0050880; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0050622; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0051379; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0050760; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0050561; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0050654; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0050623; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0050784; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0050616; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0051494; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0050349; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0049909; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 18 Row: j Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31982136. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2234 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="MGC:13982 IMAGE:4163278" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2234 FT /gene="Slc22a6" FT /note="synonyms: NKT, Oat1" FT misc_difference 1..13 FT /gene="Slc22a6" FT /note="13 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 240 FT /gene="Slc22a6" FT /note="'T' in cDNA is 'G' in the mouse genome." FT CDS 269..1906 FT /codon_start=1 FT /gene="Slc22a6" FT /product="solute carrier family 22 (organic anion FT transporter), member 6" FT /db_xref="GOA:Q8VC69" FT /db_xref="InterPro:IPR004749" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR036259" FT /db_xref="MGI:MGI:892001" FT /db_xref="UniProtKB/Swiss-Prot:Q8VC69" FT /protein_id="AAH21647.1" FT /translation="MAFNDLLKQVGGVGRFQLIQVTMVVAPLLLMASHNTLQNFTAAIP FT AHHCRPPANANLSKDGGLEAWLPLDKQGRPESCLRFPFPHNGTEANGTGVTEPCLDGWV FT YDNSTFPSTIVTEWNLVCSHRAFRQLAQSLFMVGVLLGAMMFGYLADRLGRRKVLILNY FT LQTAVSGTCAAYAPNYTVYCIFRLLSGMSLASIAINCMTLNMEWMPIHTRAYVGTLIGY FT VYSLGQFLLAGIAYAVPHWRHLQLAVSVPFFVAFIYSWFFIESARWYSSSGRLDLTLRA FT LQRVARINGKQEEGAKLSIEVLQTSLQKELTLNKGQASAMELLRCPTLRRLFLCLSMLW FT FATSFAYYGLVMDLQGFGVSMYLIQVIFGAVDLPAKFVCFLVINSMGRRPAQLASLLLA FT GICILVNGIIPRGHTIIRTSLAVLGKGCLASSFNCIFLYTGELYPTMIRQTGLGMGSTM FT ARVGSIVSPLISMTAEFYPSIPLFIFGAVPVAASAVTALLPETLGQPLPDTVQDLKSRS FT RGKQKQQQLEQQKQMIPLQVSTQEKNGL" FT misc_difference 2219..2234 FT /gene="Slc22a6" FT /note="polyA tail: 16 bases do not align to the mouse FT genome." XX SQ Sequence 2234 BP; 491 A; 676 C; 593 G; 474 T; 0 other; ccacgcgtcc gagctgagct gtccagaccc ccgaagtgaa gaaaagaggc gagggcaagg 60 gagggccaga accaggggag agagaaagga ggggcagccc accagcccgc tgtctcgcca 120 cagaaccggc tcagctccaa ctccaggagt cactcagctg cagaggcagt ggcagcccta 180 ctcctcaggc aaagggcagc agacagacag acagaggtcc taggactgga ggtcctcagt 240 cattgaccac tcagcctggc ccagccccat ggccttcaat gacctcctga aacaggtggg 300 gggtgtcgga cgcttccagc tgatccaggt caccatggtg gttgctcccc tactgctgat 360 ggcttcccac aacaccctgc agaacttcac tgctgctatc cccgctcacc actgccgccc 420 acctgctaat gccaacctca gcaaagatgg aggtctggag gcctggctgc ccctggacaa 480 gcaaggacga cccgaatctt gcctccgctt tcctttcccg cacaatggca cagaggccaa 540 tggcaccgga gtcacagagc cctgccttga tggctgggtc tatgacaaca gcaccttccc 600 ttcaaccatc gtgactgagt ggaaccttgt gtgctctcat cgggccttcc gccagctggc 660 ccagtccctg ttcatggtgg gagtgttact gggagccatg atgtttggct acctggcgga 720 caggctgggc cgtcggaagg tgctgatctt gaactacctg caaacagctg tgtcgggaac 780 ctgtgcagcc tatgcaccca actatactgt ctactgcatt ttccggctcc tctcgggcat 840 gtctttggct agcattgcaa tcaactgcat gacactaaac atggagtgga tgcctattca 900 cacccgtgcc tatgtgggca ccttgattgg ctatgtctac agcttgggcc agttcctcct 960 ggctggtatc gcctatgctg tgccccactg gcgccacctg cagcttgcgg tctctgtgcc 1020 ttttttcgtt gccttcatct actcttggtt cttcattgag tcagcccgct ggtactcctc 1080 ctctggaagg ctggacctca ccctccgagc cctgcagaga gtggcccgca tcaacgggaa 1140 acaagaagag ggggctaagc tgagtataga ggtgctccag accagcctgc agaaggaact 1200 gactctaaac aaaggccagg cctccgccat ggagctgctg cgctgcccca cgcttcggcg 1260 cctcttcctc tgcctctcta tgctgtggtt tgccactagc tttgcctact acgggctggt 1320 catggacctg cagggctttg gggtcagcat gtaccttatc caggtgattt tcggcgctgt 1380 ggacctgcct gccaagtttg tgtgcttcct agtcatcaat tccatgggcc gccggcctgc 1440 acagttggcc tccctgctgc tggcaggcat ctgtatccta gtgaatggca taataccgag 1500 gggccataca atcattcgca catccctggc tgtactaggg aaaggctgtc tggcttcctc 1560 tttcaactgc atcttcctgt acaccggaga gctgtacccc acaatgattc ggcagacggg 1620 cctgggcatg ggcagcacca tggcccgggt gggcagcata gtgagcccac tgataagcat 1680 gactgccgag ttctacccct ccatacctct cttcatcttc ggcgctgtcc ccgtggccgc 1740 cagcgctgtc actgccctgc tgccagagac cttgggccag ccgctgcctg atacagtgca 1800 ggacctgaag agcaggagca gaggaaagca gaagcaacag cagctggaac agcagaagca 1860 gatgatacca ctccaggtct caacacaaga gaagaacgga ctctgaaaat ggagagggcg 1920 tcacacagca ctaaagggag tggggttctg caggtcccac catctatgag gagggggagt 1980 gagtggaggg actgggccat ctaaatgcgg agcctgccat tcagagaaat gcctccccaa 2040 aggtcacttc aatagaccta ctaggaacaa aagctctaac tgtgtgcagc ttcttaagca 2100 gaatgagctc ttcctcagcc atcttccagc tcagtggtca ctcctccagc tcctgtccct 2160 tccacctcca ggacattgca aagaatccca gacaattaaa taaatttctt ctaccttgaa 2220 aaaaaaaaaa aaag 2234 //