Dbfetch
ID BC021496; SV 1; linear; mRNA; STD; MUS; 3669 BP. XX AC BC021496; XX DT 22-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus ATPase, Na+/K+ transporting, alpha 1 polypeptide, mRNA (cDNA DE clone MGC:38419 IMAGE:5346159), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3669 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3669 RG NIH MGC Project RA ; RT ; RL Submitted (14-JAN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 1919b5813206467474c5b592414666f9. DR Ensembl-Gn; ENSMUSG00000033161; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0027676; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0027635; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0027601; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0027648; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027377; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0028091; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0026833; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0027352; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0027495; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0027463; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0027602; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0027493; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0028146; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0026560; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0026913; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000036493; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0062775; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0062803; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0062734; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0062726; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0062410; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0063220; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0062718; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0062375; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0062489; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0062457; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0062624; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0062456; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0063420; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0062255; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0061682; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 55 Row: g Column: 1. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3669 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:38419 IMAGE:5346159" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3669 FT /gene="Atp1a1" FT /note="synonym: MGC38419" FT misc_difference 1..9 FT /gene="Atp1a1" FT /note="9 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 11 FT /gene="Atp1a1" FT /note="'G' in cDNA is 'T' in the mouse genome." FT CDS 244..3315 FT /codon_start=1 FT /gene="Atp1a1" FT /product="ATPase, Na+/K+ transporting, alpha 1 polypeptide" FT /db_xref="GOA:Q8VDN2" FT /db_xref="InterPro:IPR001757" FT /db_xref="InterPro:IPR004014" FT /db_xref="InterPro:IPR005775" FT /db_xref="InterPro:IPR006068" FT /db_xref="InterPro:IPR008250" FT /db_xref="InterPro:IPR018303" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023298" FT /db_xref="InterPro:IPR023299" FT /db_xref="InterPro:IPR036412" FT /db_xref="MGI:MGI:88105" FT /db_xref="UniProtKB/Swiss-Prot:Q8VDN2" FT /protein_id="AAH21496.1" FT /translation="MGKGVGRDKYEPAAVSEHGDKKGKKAKKERDMDELKKEVSMDDHK FT LSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLL FT WIGAILCFLAYGIRSATEEEPPNDDLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKN FT MVPQQALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGES FT EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQ FT TPIAEEIEHFIHLITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATV FT TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHE FT ADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLK FT CIEVCCGSVMEMREKYSKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDR FT CSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDDV FT NFPVDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS FT EGNETVEDIAARLNIPVNQVNPRDAKACVVHGSDLKDMTSEELDDILRYHTEIVFARTS FT PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIVGSDVSKQAADMILLDD FT NFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL FT GTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFV FT ILAENGFLPFHLLGIRETWDDRWVNDVEDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQ FT WADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGAALRMYPLKPTWWF FT CAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY" FT misc_difference 3649..3669 FT /gene="Atp1a1" FT /note="polyA tail: 21 bases do not align to the mouse FT genome." XX SQ Sequence 3669 BP; 866 A; 978 C; 1011 G; 814 T; 0 other; ccacgcgtcc gggggcgcgg agcctcggcg ggaggaggcg gacacgtggc agcggcggca 60 gcagcggcgg cagcagcggc ggcctcggtc cggggcgccg gccgtcctcc ctctttcctc 120 ccgcggcagc cctagttccc gcctctcggc tcccccggct ccgctctccc ggccgggagc 180 tgctctcttc tctttctagt ctccagcaac aggacccggc gcggggcccg cagcgccgcc 240 accatgggga agggggttgg acgagacaag tatgagcctg ccgctgtatc ggagcatggt 300 gacaaaaagg gcaaaaaggc caagaaggaa agggatatgg atgagctcaa gaaggaagtg 360 tctatggacg accataaact cagcctggat gaactccatc gtaaatacgg aacagatttg 420 agccgaggat taacacctgc aagggccgct gagatcctgg cccgggatgg ccccaacgcc 480 ctcacacccc ctcccactac tcccgaatgg gtgaaattct gccggcagct ctttggaggc 540 ttttccatgt tactgtggat cggggccatt ctttgtttcc tggcttatgg catccgaagt 600 gctacagaag aggaaccgcc aaacgatgat ctgtacctcg gggtggtgct ctctgctgta 660 gtcatcataa ctggctgttt ctcctattat caagaagcaa aaagctccaa gatcatggaa 720 tccttcaaga acatggtccc tcagcaagcc cttgtgattc gaaatggaga gaaaatgagc 780 atcaatgcgg aggatgtcgt cgtcggggat ctggtggagg tgaaaggggg agaccggatc 840 cctgctgatc ttagaatcat atctgcaaac ggctgcaagg tggataactc ctcactcact 900 ggtgaatcag aaccccagac tcggtccccg gatttcacaa acgagaaccc cttggagaca 960 aggaacattg ccttcttctc aaccaactgt gtggaaggaa ccgcacgtgg catcgtcgtg 1020 tacactgggg accgcaccgt gatgggcagg attgccacgc ttgcctctgg gctagaaggt 1080 ggccagaccc ccattgctga agagattgag catttcatcc acctcatcac cggggtggcc 1140 gtgttcctgg gggtgtcttt cttcatcctt tctctgatcc ttgagtacac ctggctcgag 1200 gctgtcatct tcctcattgg tatcatcgta gccaacgtgc cagaaggtct gctggccact 1260 gtcacggtct gtctgacact cactgccaag cgcatggcga ggaagaactg cctggtgaag 1320 aacttggaag ctgtggagac cttggggtcc acatctacca tctgctcaga caagacggga 1380 actctgactc agaaccggat gacagtggcc cacatgtggt ttgacaatca gatccatgaa 1440 gctgacacca cggagaatca gagtggtgtc tcctttgaca agacgtcagc cacctggttc 1500 gctctgtcca gaattgctgg tctctgtaac agggcagtgt ttcaggctaa ccaagaaaac 1560 ctgcctattc ttaagcgggc agtagcggga gatgcctctg agtcggcgct cttaaagtgc 1620 attgaagtct gctgcggctc cgtgatggag atgagggaga aatacagcaa gatagtggag 1680 attcccttca actccaccaa caagtaccag ttgtccattc acaagaaccc aaatgcatct 1740 gagcccaaac acctgctagt gatgaagggc gccccagaaa ggatcctgga ccgctgcagc 1800 tccatccttc tccacggcaa ggagcagcca ctggatgaag agctgaagga cgcttttcag 1860 aacgcctacc tagagctggg gggccttgga gaacgtgtgc taggtttctg ccacctcctc 1920 ctgcctgacg aacagtttcc cgaaggcttc cagtttgaca ctgacgatgt caatttcccc 1980 gtggataacc tctgcttcgt gggtcttatc tccatgattg accctccccg agctgctgtc 2040 cccgatgctg tgggcaaatg ccgcagcgct gggattaagg tcatcatggt tacaggagac 2100 catccaatca cagcgaaagc cattgccaag ggggtaggca ttatctcaga aggcaatgag 2160 actgtggaag acattgctgc ccgcctcaac attccagtga accaggtgaa ccccagagat 2220 gccaaggcct gtgtggtcca cggcagtgac ctgaaggaca tgacctccga ggagctggat 2280 gacatcttgc ggtaccacac agagatcgtc tttgccagga cctctcctca gcagaagctc 2340 atcattgtgg agggctgcca gcggcagggc gccatcgtgg ccgtcacagg ggatggtgtc 2400 aatgactctc cagctttgaa aaaggcagat attggggttg ccatggggat tgttggctct 2460 gatgtgtcca agcaagctgc tgacatgatc cttctggatg acaactttgc ctccattgtg 2520 actggagtag aggaaggtcg tctgattttt gataacttga agaaatccat cgcttacacc 2580 ctaaccagta acattccgga aatcaccccc ttcttgatat ttattattgc aaacattcca 2640 ctgcccctgg ggactgtgac catcctctgc attgacttgg gcactgacat ggttcctgcc 2700 atctccctgg cctacgagca agctgagagc gacatcatga agaggcagcc cagaaacccc 2760 aaaacggaca aacttgtgaa cgagcgtctg atcagcatgg cctatggaca gatcggtatg 2820 atccaggccc tgggaggctt cttcacttac tttgtgattc tggctgagaa cggtttcctg 2880 ccctttcacc tgttgggcat ccgagagacc tgggatgacc gctgggtcaa cgatgtggag 2940 gacagctacg ggcagcagtg gacctacgag cagaggaaga tcgtggagtt cacctgccat 3000 acagcgttct ttgtcagtat tgtggtagtg cagtgggccg acttggtcat ctgcaagacc 3060 agaaggaatt ctgtcttcca gcagggaatg aagaacaaga tcttgatatt tggcctcttt 3120 gaagagacag cccttgctgc tttcttatcc tactgccccg ggatgggggc agcccttagg 3180 atgtatcccc tcaaacctac atggtggttc tgtgccttcc cctactccct tctcatcttt 3240 gtgtatgacg aggtgcggaa gctcattatc aggcggcgcc ctggcggctg ggtggagaag 3300 gaaacctact actagcccac tgccctgcac gccgtggaac attgtgccac acactgcacc 3360 cacccctacc ccctctttgt gtacttcaag tcttggagct cggaactcta ccctggtagg 3420 aaagcaccaa agcatgtggg gatgcagacg tcctggaatg aagcatgtag ctgtaacggg 3480 gggcggggcg ggggggaggg ctgcctgaga aacaccgtgt acggggacga cagcgggcaa 3540 ggtttatacg tgcctttttg tttttgtaaa aaaggaaaac ctggaaagac tgaaagatta 3600 cgttttatat ctggattttt acaaataaag atggctatta taacggaaaa aaaaaaaaaa 3660 aaaaaaaaa 3669 //