Dbfetch
ID BC020144; SV 1; linear; mRNA; STD; MUS; 988 BP. XX AC BC020144; XX DT 04-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus desmoglein 2, mRNA (cDNA clone IMAGE:3993281), complete cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-988 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-988 RA Strausberg R.; RT ; RL Submitted (19-DEC-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Cancer RL Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, RL Bethesda, MD 20892-2590, USA XX DR MD5; 1c0675416db425ee29eb9a4984dcbdaf. DR Ensembl-Gn; ENSMUSG00000044393; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0024180; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0024144; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0024113; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0024144; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0023912; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0024587; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0023386; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0023880; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0024012; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0023978; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0024094; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0024006; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0024634; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0023131; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0023451; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000121837; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0049078; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0049054; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0049018; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0049017; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0048761; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0049511; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0048850; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0048684; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0048792; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0048759; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0048910; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0048759; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0049614; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0048449; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0048064; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 36 Row: j Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 22779878 CC This clone has the following problem: The cds is short compared to CC the longest cds in the locus. XX FH Key Location/Qualifiers FH FT source 1..988 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="mix FVB/N, C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam5" FT /clone="IMAGE:3993281" FT /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months FT old, gross tissue." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..988 FT /gene="Dsg2" FT CDS 64..942 FT /codon_start=1 FT /gene="Dsg2" FT /product="Dsg2 protein" FT /db_xref="GOA:Q8VCE3" FT /db_xref="InterPro:IPR002126" FT /db_xref="InterPro:IPR015919" FT /db_xref="InterPro:IPR020894" FT /db_xref="MGI:MGI:1196466" FT /db_xref="UniProtKB/TrEMBL:Q8VCE3" FT /protein_id="AAH20144.1" FT /translation="MARSPGDRCALLLLVQLLAVVCLDFGNGLHLEVFSPRNEGKPFPK FT HTHLVRQKRAWITAPVALREGEDLSRKNPIAKIHSDLAEEKGIKITYKYTGKGITEPPF FT GIFVFDRNTGELNITSILDREETPYFLLTGYALDSRGNNLEKPLELRIKVLDINDNEPV FT FTQEVFVGSIEELSAAHTLVMKITATDADDPETLNAKVSYRIVSQEPANSHMFYLNKDT FT GEIYTTSFTLDREEHSSYSLTVEARDGNGQITDKPVQQAQVQIRILDVNDNIPVVENKM FT VTQFYSRLTIS" FT misc_feature 262..870 FT /gene="Dsg2" FT /note="CA; Region: Cadherin repeat domain" XX SQ Sequence 988 BP; 301 A; 222 C; 256 G; 209 T; 0 other; cggacgcgtg ggcggacgcg tgggcggcga ggcccggagg cgagggcgcg gcggatcgag 60 gcgatggcgc ggagcccggg tgaccggtgc gccctgctgc tgctggtgca gctgctggcg 120 gtggtctgct tggactttgg aaatggactt cacttagagg tcttcagccc aagaaatgaa 180 ggcaaaccgt tccctaagca cactcacttg gttcgtcaaa agagggcctg gatcactgcc 240 cctgtggctc tgcgggaggg cgaagacctg tccagaaaga acccgattgc caagatacac 300 tctgaccttg cagaagaaaa agggataaaa atcacgtaca agtacactgg gaagggaatt 360 acagaaccgc ctttcggcat attcgtcttt gatagaaaca caggagaact gaacatcact 420 agcattcttg accgggaaga aacaccatat tttctgctga caggctatgc attggactcc 480 agaggaaaca acctggaaaa gcccttggaa ctacgcatca aagttctgga catcaatgac 540 aacgagccag tgttcacaca ggaggtcttt gttgggtcca ttgaggaatt gagtgcagca 600 catacacttg tgatgaaaat caccgccaca gatgcagatg acccggagac tctgaatgct 660 aaagtctcct acagaattgt ctctcaggag cctgcaaata gtcatatgtt ctacctaaat 720 aaagacacgg gggagatcta tacgaccagt tttactttgg acagagagga acacagcagc 780 tattccttga cggtggaagc aagagatggt aacgggcaga taacagacaa gccagtccag 840 caagctcaag ttcagatccg tatattggat gtcaatgaca atatacctgt ggtagaaaac 900 aaaatggtaa ctcagtttta tagtagactt actatttcct gaatcacaac taaaattaca 960 ttattgcatt aaaaaaaaaa aaaaaaaa 988 //