Dbfetch
ID BC019998; SV 1; linear; mRNA; STD; MUS; 2731 BP. XX AC BC019998; XX DT 04-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus nicastrin, mRNA (cDNA clone MGC:28725 IMAGE:4458780), complete DE cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2731 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2731 RG NIH MGC Project RA ; RT ; RL Submitted (19-DEC-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e8242443785844c22bce33d336bd40c3. DR Ensembl-Gn; ENSMUSG00000003458; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0016776; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0016755; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0016721; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0016716; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0016540; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0017178; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0016120; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0016514; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0016621; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0016618; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0016692; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0016645; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0017214; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015906; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0016182; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000003550; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0023537; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0023500; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0023470; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0023479; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0023283; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0023989; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0022828; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0023230; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0023348; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0023362; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0023455; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0023326; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0024028; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0022552; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0022846; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 37 Row: o Column: 21 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981204. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2731 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="MGC:28725 IMAGE:4458780" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2731 FT /gene="Ncstn" FT /note="synonyms: Kiaa0253, Aph2, mKIAA0253, Nct" FT CDS 13..2139 FT /codon_start=1 FT /gene="Ncstn" FT /product="nicastrin" FT /db_xref="GOA:P57716" FT /db_xref="InterPro:IPR008710" FT /db_xref="InterPro:IPR041084" FT /db_xref="MGI:MGI:1891700" FT /db_xref="UniProtKB/Swiss-Prot:P57716" FT /protein_id="AAH19998.1" FT /translation="MATTRGGSGPDPGSRGLLLLSFSVVLAGLCGGNSVERKIYIPLNK FT TAPCVRLLNATHQIGCQSSISGDTGVIHVVEKEEDLKWVLTDGPNPPYMVLLEGKLFTR FT DVMEKLKGTTSRIAGLAVTLAKPNSTSSFSPSVQCPNDGFGIYSNSYGPEFAHCKKTLW FT NELGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLGQNGSAPSFPLCAMQLFSHMHA FT VISTATCMRRSFIQSTFSINPEIVCDPLSDYNVWSMLKPINTSVGLEPDVRVVVAATRL FT DSRSFFWNVAPGAESAVASFVTQLAAAEALHKAPDVTTLSRNVMFVFFQGETFDYIGSS FT RMVYDMENGKFPVRLENIDSFVELGQVALRTSLDLWMHTDPMSQKNESVKNQVEDLLAT FT LEKSGAGVPEVVLRRLAQSQALPPSSLQRFLRARNISGVVLADHSGSFHNRYYQSIYDT FT AENINVTYPEWQSPEEDLNFVTDTAKALANVATVLARALYELAGGTNFSSSIQADPQTV FT TRLLYGFLVKANNSWFQSILKHDLRSYLDDRPLQHYIAVSSPTNTTYVVQYALANLTGK FT ATNLTREQCQDPSKVPNESKDLYEYSWVQGPWNSNRTERLPQCVRSTVRLARALSPAFE FT LSQWSSTEYSTWAESRWKDIQARIFLIASKELEFITLIVGFSILIFSLIVTYCINAKAD FT VLFVAPREPGAVSY" FT misc_difference 231 FT /gene="Ncstn" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 765 FT /gene="Ncstn" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 1086 FT /gene="Ncstn" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1284 FT /gene="Ncstn" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 1592 FT /gene="Ncstn" FT /note="'A' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'K' in cDNA, 'R' in the mouse genome." FT misc_difference 1621 FT /gene="Ncstn" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 2045 FT /gene="Ncstn" FT /note="'T' in cDNA is 'C' in the mouse genome; amino acid FT difference: 'I' in cDNA, 'T' in the mouse genome." FT misc_difference 2050 FT /gene="Ncstn" FT /note="'A' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'I' in cDNA, 'V' in the mouse genome." FT misc_difference 2058 FT /gene="Ncstn" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 2103 FT /gene="Ncstn" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 2156 FT /gene="Ncstn" FT /note="'G' in cDNA is 'C' in the mouse genome." FT misc_difference 2316 FT /gene="Ncstn" FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 2717..2731 FT /gene="Ncstn" FT /note="polyA tail: 15 bases do not align to the mouse FT genome." XX SQ Sequence 2731 BP; 646 A; 754 C; 660 G; 671 T; 0 other; cggagaggca agatggctac gactaggggc ggctctgggc ctgacccagg aagtcggggt 60 cttcttcttc tgtctttttc cgtggtactg gcaggattgt gtgggggaaa ctcagtggag 120 aggaaaatct acattccctt aaataaaaca gctccttgtg tccgcctgct caacgccact 180 catcagattg gctgccagtc ttcaattagt ggggatacag gggttatcca cgtagtggag 240 aaagaagaag acctgaagtg ggtgttgacc gatggcccca acccccctta catggttctg 300 ctggagggca agctcttcac cagagatgta atggagaagc tgaagggaac aaccagtaga 360 atcgctggtc ttgccgtgac tctagccaag cccaactcaa cttcaagctt ctctcctagt 420 gtgcagtgcc caaatgatgg gtttggtatt tactccaact cctacgggcc agagtttgct 480 cactgcaaga aaacactgtg gaatgaactg ggcaacggct tggcttatga agactttagt 540 ttccccatct ttcttcttga agatgagaac gaaaccaagg tcatcaagca gtgctatcaa 600 gatcacaacc tgggtcagaa tggctctgca ccaagcttcc cattgtgtgc tatgcagctc 660 ttctcacaca tgcacgccgt catcagcact gccacctgca tgcggcgcag cttcatccag 720 agcaccttca gcatcaaccc agaaatcgtc tgtgacccct tatctgacta caacgtatgg 780 agcatgctta agcctataaa tacatctgtg ggactagaac ctgacgtcag ggttgtggtt 840 gcggccacac ggctggatag ccggtccttt ttctggaatg tggccccagg ggctgaaagt 900 gctgtagcct cctttgtcac tcagctggct gcagctgaag ctttgcacaa ggcacctgat 960 gtgaccactc tatcccgaaa tgtgatgttt gtcttcttcc agggggaaac ttttgactac 1020 attggcagct cacggatggt ctatgatatg gagaacggca agtttcccgt gcggctcgag 1080 aacatcgact ccttcgtgga gctgggacag gtggccctaa gaacttcact agatctctgg 1140 atgcacacag atcccatgtc tcagaaaaat gagtctgtga aaaaccaggt ggaggatctt 1200 ctggccactc tggagaagag cggtgctggt gtccctgaag ttgtcctgag gagactggcc 1260 cagtcccagg cccttccacc ttcatctcta caacgatttc ttcgggctcg aaacatctct 1320 ggcgtggtcc tggctgacca ctctggctcc ttccacaatc ggtattacca gagcatttat 1380 gacacggctg agaacattaa tgtgacctat cctgagtggc agagcccaga agaggacctc 1440 aactttgtga cagacactgc caaggcactg gcgaatgtgg ccacagtgct ggcgcgtgca 1500 ctgtatgagc ttgcaggagg aaccaacttc agcagctcca tccaggctga tccccagaca 1560 gttacacgtc tgctctatgg gttcctggtt aaagctaaca actcatggtt tcagtcgatc 1620 ctgaaacatg acctaaggtc ctatttggat gacaggcctc ttcaacacta catcgccgtc 1680 tccagcccta ccaacacgac ttacgttgtg cagtacgcct tggcaaacct gactggcaag 1740 gcgaccaacc tcacccgaga gcagtgccag gatccaagta aagtcccaaa tgagagcaag 1800 gatttatatg aatactcgtg ggtacaaggc ccttggaatt ccaacaggac agagaggctc 1860 ccacagtgtg tgcgctccac agtgcgactg gccagggcct tgtcccctgc ctttgaactg 1920 agtcagtgga gctccacaga atactctacg tgggcggaga gccgctggaa agacatccaa 1980 gctcggatat tcctaattgc cagcaaagag cttgagttca tcacgctgat cgtgggcttc 2040 agcatcctta tcttctctct catcgtcacc tactgcatca atgccaaagc cgacgtcctt 2100 tttgttgctc cccgagagcc aggagctgtg tcttactgaa gaggactcta gctctgcctg 2160 cctgctctga actttacttc ccagaccagg tgtccggctg ggaacaaacc actaatttgt 2220 cactggactg tctctgggcc tgcttagacg gggattgaca cacagaatgg aactgtgagt 2280 ggagagatga ataagttgcc cccccagccc ccctttccca tttgtttctc cttctctaat 2340 cccagggact atggtagaga cttgctgctc ctaactcccc agttacccac cctcctctgc 2400 cctttctcgg gataccttct gtccttccat cctgccctgt actgccctct gactccactg 2460 tcacccgaca cccctccccc atattcagcc acctgctgca ccaggaagag ggtgtgaaag 2520 attgtgcatc tgcattcaac taccctgaac ccttagggaa gaaatggatt ccctggctga 2580 gccagtgtct ctttcccact gtcctttctc caggtgtgca gatggcatgt tagtgtgggc 2640 acgctgttaa gtgggtatcc cacctccagc ccacagtgct cagttgtact ttttattatt 2700 aaactataat tatctaaaaa aaaaaaaaaa a 2731 //