Dbfetch
ID BC019137; SV 1; linear; mRNA; STD; MUS; 3010 BP. XX AC BC019137; XX DT 13-DEC-2001 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus solute carrier family 11 (proton-coupled divalent metal ion DE transporters), member 2, mRNA (cDNA clone MGC:29081 IMAGE:5040976), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3010 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3010 RG NIH MGC Project RA ; RT ; RL Submitted (07-DEC-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 3f2c35f7488edb1a5cd2bb57ee082aa8. DR Ensembl-Gn; ENSMUSG00000023030; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022350; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022312; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022288; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022316; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022086; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0022764; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0021611; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022055; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022182; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022161; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022253; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022182; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0022778; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021350; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0021661; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023774; mus_musculus. DR Ensembl-Tr; ENSMUST00000138843; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0042605; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0042569; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0042533; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0042560; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0042296; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0043045; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0042396; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0042210; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0042361; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0042326; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0042432; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0042304; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0043083; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0041978; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0041686; mus_musculus_wsbeij. DR EuropePMC; PMC1885515; 17299088. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 39 Row: k Column: 7 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 6677988. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3010 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Kid14" FT /clone="MGC:29081 IMAGE:5040976" FT /tissue_type="Kidney, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3010 FT /gene="Slc11a2" FT /note="synonyms: DCT1, DMT1" FT misc_difference 1..4 FT /gene="Slc11a2" FT /note="4 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 6 FT /gene="Slc11a2" FT /note="'C' in cDNA is 'G' in the mouse genome." FT misc_difference 10..11 FT /gene="Slc11a2" FT /note="in the mouse genome : GC." FT CDS 107..1813 FT /codon_start=1 FT /gene="Slc11a2" FT /product="solute carrier family 11 (proton-coupled divalent FT metal ion transporters), member 2" FT /db_xref="GOA:P49282" FT /db_xref="InterPro:IPR001046" FT /db_xref="MGI:MGI:1345279" FT /db_xref="UniProtKB/Swiss-Prot:P49282" FT /protein_id="AAH19137.1" FT /translation="MVLDPKEKMPDDGASGDHGDSASLGAINPAYSNSSLPHSTGDSEE FT PFTTYFDEKIPIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKL FT LWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQ FT EVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTF FT GYEYITVKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQV FT NRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVVEVCKNNSSP FT HADLFPSDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVME FT GFLNLKWSRFARVILTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPIL FT TFTSLRPVMSEFSNGIGWRIAGGILVLIVCSINMYFVVVYVQELGHVALYVVAAVVSVA FT YLTFVFYLGWQCLIALGLSFLDCGRSYRLGLTAQPELYLLNTVDADSVVSR" FT misc_difference 3000..3010 FT /gene="Slc11a2" FT /note="polyA tail: 11 bases do not align to the mouse FT genome." XX SQ Sequence 3010 BP; 606 A; 762 C; 802 G; 840 T; 0 other; ccacgcgtcc gcgctggctc ctgggatatg gagtcgccgg cgcggcgtgt gtggaggtgg 60 cggagccgaa tcctattcta agagcacaga ccctcaggta tctaccatgg tgttggatcc 120 taaagaaaag atgccagacg atggcgcttc tggggaccat ggagactctg ccagccttgg 180 cgccatcaac cctgcctaca gcaactcatc cctcccacat tccactggag actctgagga 240 gcccttcacc acctactttg atgagaaaat ccccattcct gaggaggagt actcttgttt 300 tagctttcgt aaactctggg cgttcacggg gcctggcttt cttatgagca ttgcctacct 360 agacccagga aacatcgaat ctgatttgca gtctggagca gtggctggat ttaagctgct 420 ctgggtgctc ctcttggcca ccattgtggg gctgctgctc cagcgccttg cagcgagact 480 tggagtggtc accggcttgc atcttgctga agtatgtcac cgtcagtatc ccaaggtccc 540 acggatcatc ctgtggctga tggtggagtt ggcaatcatt ggttctgaca tgcaggaagt 600 cattggctca gccatcgcca tcaatctcct gtctgcagga agggtccccc tgtggggcgg 660 agtcctcatc accatcgcag acacttttgt gtttcttttt ttggacaaat atggcttgcg 720 gaagctggaa gcgttttttg gctttctcat cactatcatg gccctcacgt ttggatatga 780 gtacattaca gtgaagccca gccagagcca agtactcagg ggcatgttcg tgccgtcctg 840 tccagggtgc cgcacccctc aggtggagca ggcggtgggc atcgtgggag ctgtgatcat 900 gccgcacaac atgtacctgc attctgcctt agtcaagtct agacaggtga atcgggccaa 960 taagcaggaa gtgcgggaag ccaataagta cttcttcatc gagtcctgca tcgcgctctt 1020 tgtttccttc atcatcaatg tctttgtcgt gtccgtcttt gctgaagcat tttttgagaa 1080 aaccaacaag caggtggttg aagtctgcaa aaataacagc agcccccatg ctgacctctt 1140 tcccagtgac aactctactc tggctgtgga catctacaaa gggggtgttg tgcttggatg 1200 ttacttcggg cctgcagctc tctacatctg ggcagtgggg atcctggctg ccggtcagag 1260 ctccaccatg actggaacct attctggcca gtttgtcatg gagggattcc tgaacctaaa 1320 atggtcgcgc tttgcccgag tgatcctgac ccggtctatc gccatcatcc ccaccctgct 1380 cgtcgctgtc ttccaggatg tggagcacct aacggggatg aatgacttcc tgaatgtcct 1440 gcagagctta cagctcccct ttgctctcat acccatcctc acgttcacaa gcctgcggcc 1500 agtgatgagt gagttttcca atggaatagg ctggaggatt gccggtggca tcctggtcct 1560 gatcgtctgc tccatcaaca tgtactttgt agtggtttat gtccaggagc tagggcatgt 1620 ggcactctat gtggtggctg cagtggttag cgtggcttat ttgacctttg tgttctactt 1680 gggttggcag tgtttgattg cattgggtct gtctttcctg gactgtggac gctcgtaccg 1740 cctgggactg accgctcagc ctgaactcta tcttctgaac accgtggatg ctgactcagt 1800 ggtgtccaga tgactaacag cccaggagac cttaagaaca ctttctctaa gccctttcgg 1860 gccaagtgcc tgttagcaaa tcccttagtt cggaggtgag cttgttcaaa ggtttttgaa 1920 caaaggagaa gttctcctca cggactcagg gtaaaagctg acagttgcgt atgggtcaga 1980 gacccttcgg aggcagtggg cctgtggcag ctgtgcagtc cctcaggctt gtgtctgcac 2040 ttctggggtt taaagtgtat cgatatgtat ttatgtgaac ccaaacgtgc cagtttgggt 2100 aagattttaa ggttataaaa cttgatagat ttttacaaat gcctttcagg tgagttaggt 2160 ctttgttcta tttgggtaac aaatgagaaa gggacctttc tgacgatgaa cttccccaaa 2220 ataactcttg aagcgctgct ttaccacagt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt 2280 gcgcgcgcgc gtgcctgcct gcttctgctt gtgggggcca cgggttggca tcaggtgtct 2340 ccagtctcta ccacagtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg 2400 tgtgtgcgtg cgcgagtgcc tgcctgcttc tgcttgtggg ggccacgggt tggcatcagg 2460 tgtctccagt ctctctctga acatggagtt cagtgtgtga ctgagctagc cagccagtaa 2520 gttcaaggat cctcctggcc tcgcgcccca acactgtggt cccagatcag ctgctacgcc 2580 cagattttac acagtgctgg ggacccaaac tcaggtcttc ctggacagca ggtactttac 2640 caactttccc cctttgtctc tacatcaagt gtgtctgtgg ctgttgttcc gttggtgtct 2700 gtccacctgc cctttcttcc cactctacgc gctgacactc cacacactgt cctcaccctg 2760 tctctaaggg ccgcccgtat gtgtaccgct gagtgtcctg aggaatttaa gcattttaag 2820 gtgtgtgtta gcagaggtct gaggctcgca ctcgatggga acacagacca tcagtttcac 2880 tttaagcacc gacactccaa acgcgcgtgt gcaggtagtg aagctttttg gtttttgctt 2940 taatcccaac cagaaataat catccttgtt ataataaagt tcatgcttaa tagctaaaaa 3000 aaaaaaaaaa 3010 //