Dbfetch
ID BC017199; SV 2; linear; mRNA; STD; HUM; 1497 BP. XX AC BC017199; XX DT 14-NOV-2001 (Rel. 69, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Homo sapiens paired-like homeobox 2b, mRNA (cDNA clone MGC:1678 DE IMAGE:3161284), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1497 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1497 RG NIH MGC Project RA ; RT ; RL Submitted (05-NOV-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 6e2caa0f7c9964b47ce95eccd543adf7. DR Ensembl-Gn; ENSG00000109132; homo_sapiens. DR Ensembl-Tr; ENST00000226382; homo_sapiens. XX CC On Aug 19, 2003 this sequence version replaced gi:16877954. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Rubin Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 4 Row: n Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 12707579. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1497 FT /organism="Homo sapiens" FT /lab_host="DH10B-R" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_19" FT /clone="MGC:1678 IMAGE:3161284" FT /tissue_type="Brain, neuroblastoma" FT /note="Vector: pOTB7" FT /db_xref="taxon:9606" FT gene 1..1497 FT /gene="PHOX2B" FT /note="synonym: NBPhox" FT CDS 97..1041 FT /codon_start=1 FT /gene="PHOX2B" FT /product="paired-like homeobox 2b" FT /db_xref="GOA:Q99453" FT /db_xref="H-InvDB:HIT000037869.17" FT /db_xref="HGNC:HGNC:9143" FT /db_xref="InterPro:IPR001356" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR017970" FT /db_xref="UniProtKB/Swiss-Prot:Q99453" FT /protein_id="AAH17199.1" FT /translation="MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYN FT PIRTTFGATSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTT FT FTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAA FT AAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAG FT APGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPIT FT SIPDSLGGPFASVLSSLQRPNGAKAALVKSSMF" FT misc_difference 1488..1497 FT /gene="PHOX2B" FT /note="polyA tail: 10 bases do not align to the human FT genome." XX SQ Sequence 1497 BP; 299 A; 482 C; 462 G; 254 T; 0 other; cgttgagctg tgcacatctc cccactccag ccaccttctc catatccatc ttttatttca 60 tttttccact tggctgagcc atccagaacc ttttcaatgt ataaaatgga atattcttac 120 ctcaattcct ctgcctacga gtcctgtatg gctgggatgg acacctcgag cctggcttca 180 gcctatgctg acttcagttc ctgcagccag gccagtggct tccagtataa cccgataagg 240 accacttttg gggccacgtc cggctgccct tccctcacgc cgggatcctg cagcctgggc 300 accctcaggg accaccagag cagtccgtac gccgcagttc cttacaaact cttcacggac 360 cacggcggcc tcaacgagaa gcgcaagcag cggcgcatcc gcaccacttt caccagtgcc 420 cagctcaaag agctggaaag ggtcttcgcg gagactcact accccgacat ctacactcgg 480 gaggagctgg ccctgaagat cgacctcaca gaggcgcgag tccaggtgtg gttccagaac 540 cgccgcgcca agtttcgcaa gcaggagcgc gcagcggcag ccgcagcggc cgcggccaag 600 aacggctcct cgggcaaaaa gtctgactct tccagggacg acgagagcaa agaggccaag 660 agcactgacc cggacagcac tgggggccca ggtcccaatc ccaaccccac ccccagctgc 720 ggggcgaatg gaggcggcgg cggcgggccc agcccggctg gagctccggg ggcggcgggg 780 cccgggggcc cgggaggcga acccggcaag ggcggcgcag cagcagcggc ggcggccgcg 840 gcagcggcgg cggcggcagc ggcagcggcg gcagctggag gcctggctgc ggctgggggc 900 cctggacaag gctgggctcc cggccccggc cccatcacct ccatcccgga ttcgcttggg 960 ggtcccttcg ccagcgtcct atcttcgctc caaagaccca acggtgccaa agccgcctta 1020 gtgaagagca gtatgttctg atctggaatc ctgcggcggc ggcggcggcg gcgacagcgg 1080 gcgagccagg gcccgggcgg gcgagtgggc gagcgggtag gcccaaggct attgtcgtcg 1140 ctgctgccat ggctttttca ttgagggcct aaagtaatcg cgctaagaat aaagggaaaa 1200 cggcgtcgcc ctcatttcaa ccccactcct acccccttcc tcaaccccca aacaaaacaa 1260 acaaacttcc ctggcttcgc acctgcctgg ggcctcgcag cggggccagg gctccgcctg 1320 ctgatcgggg gttgtgagca gcgcggcctg gacgcggggc actctcaggg ggctgtgtct 1380 gcgtgtcagt ttgtgtctgt ctcggggaat gtgtgtctgt ggcccaagca ggtgacagga 1440 agagatgggg ggcctcaacc aacttagtga cttgtttaga aaaaaaaaaa aaaaaaa 1497 //