Dbfetch
ID BC011491; SV 1; linear; mRNA; STD; MUS; 1372 BP. XX AC BC011491; XX DT 03-AUG-2001 (Rel. 68, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus syntaxin 4A (placental), mRNA (cDNA clone MGC:19006 DE IMAGE:4016871), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1372 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1372 RG NIH MGC Project RA ; RT ; RL Submitted (30-JUL-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 920d5e6228daedd51d0fa464aea257fe. DR Ensembl-Gn; ENSMUSG00000030805; mus_musculus. DR Ensembl-Tr; ENSMUST00000033075; mus_musculus. DR Ensembl-Tr; ENSMUST00000121705; mus_musculus. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 24 Row: a Column: 23 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981984. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1372 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="Czech II" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Lu30" FT /clone="MGC:19006 IMAGE:4016871" FT /tissue_type="Mammary tumor metastatized to lung. FT MMTV-LTR/Wnt1 model. Expression driven by an MMTV-LTR FT enhancer." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1372 FT /gene="Stx4a" FT /note="synonyms: Stx4, Syn4" FT misc_difference 216 FT /gene="Stx4a" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 226 FT /gene="Stx4a" FT /note="'G' in cDNA is 'A' in the mouse genome." FT CDS 232..1128 FT /codon_start=1 FT /gene="Stx4a" FT /product="syntaxin 4A (placental)" FT /db_xref="GOA:P70452" FT /db_xref="InterPro:IPR000727" FT /db_xref="InterPro:IPR006011" FT /db_xref="InterPro:IPR006012" FT /db_xref="InterPro:IPR010989" FT /db_xref="MGI:MGI:893577" FT /db_xref="PDB:3PUJ" FT /db_xref="PDB:3PUK" FT /db_xref="UniProtKB/Swiss-Prot:P70452" FT /protein_id="AAH11491.1" FT /translation="MRDRTHELRQGDNISDDEDEVRVALVVHSGAARLGSPDDEFFQKV FT QTIRQTMAKLESKVRELEKQQVTILATPLPEESMKQGLQNLREEIKQLGREVRAQLKAI FT EPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVERIRRQLKIT FT NAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQLERSIRELHE FT IFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARKKKVMIAICVS FT VTVLILAVIIGITITVG" FT misc_difference 909 FT /gene="Stx4a" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." XX SQ Sequence 1372 BP; 355 A; 310 C; 434 G; 273 T; 0 other; gcaggatggg gggaagagaa gggaattcca acctgtagaa ctttgggggt cctatgatcg 60 ggttcttccc cacgactgtg gatggtgaaa ggggtggggc ctttggcggc tccggggtgt 120 actggagttc gctgggtgag ggagggggtg tcaagtgtga gagaggtgca ggacttccaa 180 atttagaacc ttgaggccct ttgggctcgg gtccaaggca ctccggccac catgcgcgac 240 aggacccacg agttgaggca gggggataac atctcagacg atgaagatga ggttcgagtc 300 gcgctggtgg tgcactcagg tgctgcccgg ttgggcagcc cggacgacga gttcttccag 360 aaggtgcaga caattcggca gactatggcc aaactggaga gtaaagtccg ggagttggag 420 aaacagcagg tcaccatcct ggccacgcct cttcccgagg agagcatgaa gcagggcctg 480 cagaacctgc gagaggagat caaacagctg gggagagagg tccgggcgca gctaaaagcc 540 atagagcccc agaaggagga agctgatgag aattacaact cagtcaacac aaggatgaag 600 aaaacccagc atggagtcct gtcccagcaa tttgtcgagc tcatcaacaa gtgcaactca 660 atgcagtccg aataccgaga gaagaatgtg gagcggatcc ggaggcagct gaagatcacc 720 aatgctggaa tggtgtctga cgaggagctg gaacagatgc tggacagtgg gcagagtgag 780 gtgtttgtgt ctaatatcct gaaggacacg caggtgactc ggcaggccct gaatgagatc 840 tctgcgcggc acagtgagat ccagcagttg gagcgcagta tccgagagct ccatgagatc 900 tttacgttcc tagctacgga ggtggagatg cagggggaga tgatcaaccg catcgagaag 960 aacatcctga gctcggccga ctacgtggaa cgtgggcaag agcacgtcaa gatagcccta 1020 gagaatcaga agaaggcgag gaagaaaaaa gtcatgattg ccatctgtgt ctctgtcact 1080 gttctcatct tggctgtcat cattggcatc accataaccg ttggataatg tcacatgttc 1140 ttggcattgg gagagacaga gacccagctt ttgtggaggt ggggcaggcc tccaactgaa 1200 cccgtccgca cactggacct tgtgcagagg gcctgcggct cgtcctgggt tggcagctgc 1260 tcattcatgg agtcctcccc tggagtcctc cacaatgcct gcgagacagt tttcaatgtc 1320 ctgtttgtct gggatacatg gttttgtaaa aaatttaaaa aaaaaaaaaa aa 1372 //