Dbfetch
ID BC011490; SV 1; linear; mRNA; STD; MUS; 3540 BP. XX AC BC011490; XX DT 03-AUG-2001 (Rel. 68, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 15) XX DE Mus musculus cholinergic receptor, nicotinic, alpha polypeptide 2 DE (neuronal), mRNA (cDNA clone MGC:18795 IMAGE:4193582), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3540 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3540 RG NIH MGC Project RA ; RT ; RL Submitted (30-JUL-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 04571baa578b79a5e718ad501ac23c80. DR Ensembl-Gn; ENSMUSG00000022041; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0021492; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0021451; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0021427; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0021457; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0021234; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0021896; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0020751; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0021201; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0021324; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0021303; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0021399; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0021332; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0021919; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0020495; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0020804; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000022620; mus_musculus. DR Ensembl-Tr; ENSMUST00000206455; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0039907; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0039877; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0039834; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0039881; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0039617; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0040355; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0039622; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0039535; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0039679; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0039646; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0039770; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0039640; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0040388; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0039232; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0039009; mus_musculus_wsbeij. DR EuropePMC; PMC3604165; 23172249. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 24 Row: j Column: 10 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 21450162. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3540 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_SG2" FT /clone="MGC:18795 IMAGE:4193582" FT /tissue_type="Salivary gland, 10 week old female mouse" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3540 FT /gene="Chrna2" FT /note="synonym: MGC18795" FT CDS 117..1655 FT /codon_start=1 FT /gene="Chrna2" FT /product="cholinergic receptor, nicotinic, alpha FT polypeptide 2 (neuronal)" FT /db_xref="GOA:Q91X60" FT /db_xref="InterPro:IPR002394" FT /db_xref="InterPro:IPR006029" FT /db_xref="InterPro:IPR006201" FT /db_xref="InterPro:IPR006202" FT /db_xref="InterPro:IPR018000" FT /db_xref="InterPro:IPR036719" FT /db_xref="InterPro:IPR036734" FT /db_xref="MGI:MGI:87886" FT /db_xref="UniProtKB/Swiss-Prot:Q91X60" FT /protein_id="AAH11490.1" FT /translation="MAPSHPAFQFWIHLYLWCLLLMPAVLAQQGSHTHAEDRLFKHLFG FT GYNRWARPVPNTSDVVIVRFGLSIAQLIDVDEKNQMMTTNVWLKQEWNDYKLRWDPAEF FT GNITSLRVPSEMIWIPDIVLYNNADGEFAVTHMTKAHLFFTGTVHWVPPAIYKSSCSID FT VTFFPFDQQNCKMKFGSWTYDKAKIDLEQMERTVDLKDYWESGEWAIINATGTYNSKKY FT DCCAEIYPDVTYYFVIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVL FT LSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPSTHNMP FT NWVRVALLGRVPRWLMMNRPLPPMELHGSPGLKLSPTYHWLETNMDAEEREETEEEEEE FT EEDENICMCAGLPDSSMGVLYGHGSLHLRAMGPEAKTPSQASEILLSPQIQKALEGVHY FT IADHLRSEDADSSVKEDWKYVAMVVDRIFLWLFIIVCFLGTIGLFLPPFLAGMI" FT misc_difference 3437 FT /gene="Chrna2" FT /note="'C' in cDNA is 'G' in the mouse genome." FT misc_difference 3528..3540 FT /gene="Chrna2" FT /note="polyA tail: 13 bases do not align to the mouse FT genome." XX SQ Sequence 3540 BP; 867 A; 937 C; 888 G; 848 T; 0 other; atgatatggc ctggactcaa agtcacgctt gcagactctg gatgggctgc agagagacag 60 ggccttgaag aagccagctc cttgtagtcc aacagaaacc aggaccctct gaagccatgg 120 ccccctccca tcctgctttc cagttctgga tacatcttta tctctggtgt ctgcttctga 180 tgccagcagt gttggcccag caaggctcgc acacccatgc cgaggaccgc ctgttcaaac 240 acctctttgg aggctacaat cgctgggcac ggccagtgcc caacacttcc gatgtggtca 300 tcgtgcgctt tggactatcc attgcacagc tcatagatgt ggatgagaag aatcaaatga 360 tgaccaccaa tgtctggcta aagcaggaat ggaatgacta caagctgcgc tgggacccgg 420 ctgagtttgg caacatcacc tccctccgcg tcccctcaga gatgatctgg atcccagaca 480 ttgttctcta caacaatgca gacggggagt ttgcggtgac ccacatgacc aaggcccacc 540 tcttcttcac gggcactgtg cactgggtgc ccccagccat ctacaagagc tcctgcagca 600 tcgacgtgac tttcttcccc ttcgaccagc agaactgcaa gatgaagttt ggctcctgga 660 catacgacaa ggccaagatc gacctggagc agatggagcg gacggtggac ctgaaggact 720 actgggagag cggcgagtgg gccattatca acgccaccgg aacctataac agcaagaagt 780 acgactgctg cgcggagatc taccccgacg tcacctacta cttcgttatc cgccggctgc 840 cgctgttcta caccatcaac ctcattatcc cgtgcctgct catctcctgc ctcaccgtgc 900 tcgtgttcta cttgccctct gagtgtggag agaagatcac gctgtgcatc tcggtgctgc 960 tctccctcac tgtcttcctg ctgctcatca cagaaattat cccatccacc tcactggtca 1020 tcccactcat cggcgagtac ctgctcttca ccatgatctt cgtcaccctc tctattgtga 1080 tcacagtctt cgtgctcaat gtccaccacc gttcccctag cacgcacaac atgcccaact 1140 gggtgagggt ggccctgcta ggccgggtgc cccggtggct gatgatgaat cggcccctgc 1200 cgcccatgga gctccatggc tctccaggtc tgaagctcag ccccacttat cattggctgg 1260 agaccaacat ggatgctgaa gaaagggagg agacagagga agaggaggag gaggaagaag 1320 atgaaaacat atgtatgtgt gcaggcctcc cagactcttc catgggtgtc ctctatggcc 1380 atggcagcct gcatctgagg gccatggggc ctgaggccaa gactccatcc caggctagtg 1440 agatcctgct gtcacctcaa atacagaaag cactagaagg tgtacactac attgctgacc 1500 acctgaggtc tgaggatgct gactcttcgg tgaaggaaga ttggaagtat gtggccatgg 1560 tggtagaccg gatcttcctc tggctgttca ttatcgtctg cttcctgggg accatcgggc 1620 tcttcctccc tccgttcctg gctggaatga tctgacttga tgtccctcat gttggctcca 1680 aggtggcctg gacaaccatc ttctgctctt ctgtgactgg agccatctct agaatattct 1740 tttgacttaa tgccacctgc ctgcgatgtt tctacgaggc ccctgatcta gcctggactt 1800 catatcctcc ttgtcaacag ttcatggtgc cattgcggtg acaagcactg agaccactca 1860 acatgacaac tatttaggga tgctgaggaa ctagaagagg tgaaggctgc tctgtaggtg 1920 atgacaacat ggtggtgata tggggggaga gcaagatagt tctgaaagag catataggag 1980 ttgtctatgg caaaagggtc aaacaaaggg atggaggggt cagaccagga caaagggaaa 2040 tagaacactg gcccaaagat gggcacaagg ggacaatggg agtgcctggt gtggaagagt 2100 tctgcacaac actgtggatt cagaatgtca gagaggacag ccagctgggg tggggaggct 2160 gggaggcaag ttgggatatt tttgacccag gcccaagaag aagctcagag tctgcactga 2220 acctgtctct atgcactttg caggaaatgt cagagggaca ggggtacttc ccaaaggagt 2280 ggggcacaaa gaaagttcta gagcagtggc tttcaacctg tgtcgtgggt tgcaaccctt 2340 cagggagtca aacgaccctt tcacaggggt cacatatcag atatcctgca tatcagatgt 2400 tttacatgac agtccataac aatatcaaaa ttactgttat gaagttgaaa tgaaaacaat 2460 tttgtggttg gggtcacaac atgaggaact gtaaagggtc atagcattag gaaggttgag 2520 aaccactgat ctaggtgccc tggtggatgc ttgaggcaga atagcaacat tgggtataag 2580 ttgctgggcc attattcaac caaaagcact ttggagcctt caagttcccc tcagtgtcat 2640 gtctcactgt tctatgctac aaaaaaagag gtatagcaat ttctacaagg gatcagggct 2700 accttcaaat caagaggaca aagtaagaag gcagtctcca atgttggcac ccttcttgct 2760 gtccacaggg acctggtcct caattcctgg ctctgtcagc atgcctcaca taggaactga 2820 gatctttgca tcaagctctt tcaattgtgt gctccttcag ggcagagtct ctgctcttgt 2880 tgctttcact catcctgagc tgggtgagag agctcagtag ctggaccctc catcgtgagt 2940 agtggagaga aaccaacctg gtagctttag gctccagaac tgctacataa taccaaagct 3000 ttgggggagg actcttcccc agtcttccca gggccccatc aggtgactaa cctgctctga 3060 actgtcctgt gtagcttgtt cttttacttg taatattcca cgacccttca ttgcatagaa 3120 gcccagcgga ttgggccttt cagaacattc tgcagtcccc aaggaattag gtcccagacg 3180 ctaacagcaa tgagattcag ggtcactaag agatatagag accaagtttg ttctctgtct 3240 tggggtgctc tccttccgaa ccccacacac agcacctcga cagacctagg agatctgctt 3300 gtcggaggcc ttacccagac ttcctgttac cagttctaat gatacccact cagtctcagg 3360 ccttggctcc ccctttctcc actgaatgca gccggcacct cttttctctg tgtcaaaccc 3420 caagacatga tttcctcatg cagagatgct tgttggatga tccctacccc ccatcctcct 3480 tgcatgtgag tgaaatgtca aaataaagct aaaatgtctg ccgtcaaaaa aaaaaaaaaa 3540 //