Dbfetch
ID BC009004; SV 1; linear; mRNA; STD; MUS; 2181 BP. XX AC BC009004; XX DT 08-JUN-2001 (Rel. 68, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus protein phosphatase 1G (formerly 2C), magnesium-dependent, DE gamma isoform, mRNA (cDNA clone MGC:6666 IMAGE:3499081), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2181 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2181 RG NIH MGC Project RA ; RT ; RL Submitted (30-MAY-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 4f1ddc42cfc93237e11b5e9a1ca9b310. DR Ensembl-Gn; ENSMUSG00000029147; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029418; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029384; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029334; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029395; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0029116; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0029848; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028526; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0029084; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029233; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0029191; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029318; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0029220; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0029882; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0028251; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028607; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000031032; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0070855; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0070934; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0070833; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0070859; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0070505; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0071335; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0071039; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0070445; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0070582; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0070494; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0070656; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0070517; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0071536; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0070511; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0069659; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 9 Row: l Column: 7 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31982360. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2181 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:6666 IMAGE:3499081" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2181 FT /gene="Ppm1g" FT misc_difference 5 FT /gene="Ppm1g" FT /note="'G' in cDNA is 'C' in the mouse genome." FT CDS 124..1752 FT /codon_start=1 FT /gene="Ppm1g" FT /product="protein phosphatase 1G (formerly 2C), FT magnesium-dependent, gamma isoform" FT /db_xref="GOA:Q61074" FT /db_xref="InterPro:IPR000222" FT /db_xref="InterPro:IPR001932" FT /db_xref="InterPro:IPR015655" FT /db_xref="InterPro:IPR036457" FT /db_xref="MGI:MGI:106065" FT /db_xref="UniProtKB/Swiss-Prot:Q61074" FT /protein_id="AAH09004.1" FT /translation="MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNC FT IPELDNETAMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALQDAFLAIDAK FT LTTEEVIKELAQIAGRPTEDEDDKDKVADEDDVDNEEAALLHEEATMTIEELLTRYGQN FT CQKVPPHTKSGIGTGDEPGPQGLNGEAGPEDPSRETPSQENGPTAKGHTGFSSNSEHGT FT EAGQISEPGTATGEAGPSCSSASDKLPRVAKSKFFEDSEDESDEVEEEEDDSEECSEDE FT DGYSSEEAENEEDEDDTEEAEEDDDEEMMVPGMEGKEEPGSDSGTTAVVALIRGKQLIV FT ANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGD FT HFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKIS FT QRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPRNTVELQAESGKR FT KLEEALSTEGAEDTGNSDKKKAKRD" FT misc_difference 2166..2181 FT /gene="Ppm1g" FT /note="polyA tail: 16 bases do not align to the mouse FT genome." XX SQ Sequence 2181 BP; 547 A; 536 C; 637 G; 461 T; 0 other; cttgggtcga ctgcgcagcc gggcccgctc cttgccacgc gcgcccccag gggccccggc 60 tccggcgccg gcaagggtcg cgtcccgctt acctgttcct caggtagcca gccatccgcc 120 gccatgggtg cctacctctc tcagcccaac acggtgaagt gctccgggga cggggttggc 180 gccccgcggc tcccgctgcc ctacggcttc tccgccatgc aaggctggcg cgtctccatg 240 gaggatgctc acaactgtat tcctgagctg gacaatgaga cagccatgtt ttctgtctac 300 gatggacatg gaggggaaga ggttgccttg tactgtgcca aatatcttcc tgatattatc 360 aaagatcaga aggcctacaa ggaaggcaag cttcagaagg ctttacaaga tgccttcttg 420 gctattgatg ccaagctgac cacagaggaa gtcattaagg aactggccca gattgcaggg 480 agacccactg aagatgagga tgataaagac aaagtagcag atgaggatga tgtggacaat 540 gaggaggctg cattgttgca tgaagaggct accatgacta ttgaagagct gctgacgcga 600 tatgggcaga actgtcagaa ggtccctccc cacaccaaat ctggaattgg gacaggcgat 660 gaaccagggc cccagggcct caatggggag gctggacctg aggacccatc tagggaaact 720 ccttcccagg aaaatggccc cacagccaaa ggccacacag gcttttcctc caactcggaa 780 catgggactg aggcaggcca aattagtgag cccggtactg ctaccggtga ggctggacct 840 tcctgctctt cagcctctga caagctgcct cgagttgcta agtccaagtt ctttgaggac 900 agtgaagatg aatcagatga ggtggaggaa gaggaggatg acagtgagga atgtagtgag 960 gacgaggacg gctacagcag tgaggaggca gagaacgagg aagacgagga tgacacggag 1020 gaggctgaag aggatgatga tgaagagatg atggtccctg gaatggaagg caaagaagag 1080 cctggttctg acagtggcac aacagcggtg gtggctctga tcagagggaa gcagttgatt 1140 gtggccaatg caggagactc tcgctgtgtg gtgtccgagg ctggcaaagc tttagatatg 1200 tcctatgacc acaaaccaga ggatgaagtg gagctggcac gcatcaagaa tgctggtggc 1260 aaggtcacca tggatggacg agtcaatgga ggcctcaacc tctccagggc cattggagac 1320 cacttctaca agagaaacaa aaacttgcca ccccaggaac agatgatttc tgcccttcct 1380 gacatcaagg tgctgactct cactgatgac catgaattca tggtcattgc ttgtgacggc 1440 atctggaatg tgatgagcag ccaggaggtt gtagacttta ttcaatcaaa gatcagtcaa 1500 cgtgatgaaa acggggagct tcggttattg tcatccattg tggaagagct gctggatcag 1560 tgcctggcgc cagacacttc tggggatggt acagggtgtg acaacatgac gtgcatcatc 1620 atttgcttca agccccgaaa cacagtagag cttcaggcag agagtggcaa gaggaaactg 1680 gaggaggcac tgtccacgga gggggctgaa gacaccggca acagtgacaa aaagaaggcc 1740 aagagggact agtggtcaac cggaccctgc ccatgtggac tgttttctga gcccttggac 1800 ccgagactga gttttgtcct tgtcctttag ccttagcagt gggtatgagg tgtgcagggg 1860 gctgggtggc tttcctcagc ccattacaaa gagggccccc cacccccccc acgcggcagc 1920 ctgggaggct ctgctgtcct cttaagcctc cttactctcc ttgggctcat cgactatcgg 1980 ttctgtgcct gtgctctgtt gtgttggagg gaaggactgg tagttctgat ttttactctg 2040 tgaacacttt atttaaggac attctttttt attggcggct ctgtgacccc tagccgcttg 2100 cacccgctct ctgttgtaca ctttcaagca acactttttc agactaaagg ccaaacaaaa 2160 gctaaaaaaa aaaaaaaaaa a 2181 //