Dbfetch
ID BC008188; SV 2; linear; mRNA; STD; HUM; 906 BP. XX AC BC008188; XX DT 31-MAY-2001 (Rel. 67, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 13) XX DE Homo sapiens Parkinson disease (autosomal recessive, early onset) 7, mRNA DE (cDNA clone MGC:5243 IMAGE:2901102), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-906 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-906 RG NIH MGC Project RA ; RT ; RL Submitted (22-MAY-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 11f21a9cb787ccd596d27c6df4e6bd70. DR Ensembl-Gn; ENSG00000116288; homo_sapiens. DR Ensembl-Tr; ENST00000338639; homo_sapiens. DR Ensembl-Tr; ENST00000377488; homo_sapiens. DR Ensembl-Tr; ENST00000377491; homo_sapiens. DR Ensembl-Tr; ENST00000493373; homo_sapiens. DR Ensembl-Tr; ENST00000493678; homo_sapiens. DR EuropePMC; PMC2638760; 18930142. XX CC On Aug 25, 2003 this sequence version replaced gi:14198256. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 3 Row: a Column: 23 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 34222306. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC sequences available as of 09/15/2004. XX FH Key Location/Qualifiers FH FT source 1..906 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_12" FT /clone="MGC:5243 IMAGE:2901102" FT /tissue_type="Cervix, carcinoma" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:9606" FT gene 1..906 FT /gene="PARK7" FT /note="synonyms: DJ-1, DJ1" FT CDS 85..654 FT /codon_start=1 FT /gene="PARK7" FT /product="Parkinson disease (autosomal recessive, early FT onset) 7" FT /db_xref="GOA:Q99497" FT /db_xref="H-InvDB:HIT000033663.16" FT /db_xref="HGNC:HGNC:16369" FT /db_xref="InterPro:IPR002818" FT /db_xref="InterPro:IPR006287" FT /db_xref="InterPro:IPR029062" FT /db_xref="PDB:1J42" FT /db_xref="PDB:1P5F" FT /db_xref="PDB:1PDV" FT /db_xref="PDB:1PDW" FT /db_xref="PDB:1PE0" FT /db_xref="PDB:1Q2U" FT /db_xref="PDB:1SOA" FT /db_xref="PDB:1UCF" FT /db_xref="PDB:2OR3" FT /db_xref="PDB:2R1T" FT /db_xref="PDB:2R1U" FT /db_xref="PDB:2R1V" FT /db_xref="PDB:2RK3" FT /db_xref="PDB:2RK4" FT /db_xref="PDB:2RK6" FT /db_xref="PDB:3B36" FT /db_xref="PDB:3B38" FT /db_xref="PDB:3B3A" FT /db_xref="PDB:3BWE" FT /db_xref="PDB:3CY6" FT /db_xref="PDB:3CYF" FT /db_xref="PDB:3CZ9" FT /db_xref="PDB:3CZA" FT /db_xref="PDB:3EZG" FT /db_xref="PDB:3F71" FT /db_xref="PDB:3SF8" FT /db_xref="PDB:4BTE" FT /db_xref="PDB:4MNT" FT /db_xref="PDB:4MTC" FT /db_xref="PDB:4N0M" FT /db_xref="PDB:4N12" FT /db_xref="PDB:4OGF" FT /db_xref="PDB:4OQ4" FT /db_xref="PDB:4P2G" FT /db_xref="PDB:4P34" FT /db_xref="PDB:4P35" FT /db_xref="PDB:4P36" FT /db_xref="PDB:4RKW" FT /db_xref="PDB:4RKY" FT /db_xref="PDB:4S0Z" FT /db_xref="PDB:4ZGG" FT /db_xref="PDB:5IP5" FT /db_xref="PDB:5SY6" FT /db_xref="PDB:5SY9" FT /db_xref="PDB:5SYA" FT /db_xref="PDB:6AF5" FT /db_xref="PDB:6AF7" FT /db_xref="PDB:6AF9" FT /db_xref="PDB:6AFA" FT /db_xref="PDB:6AFB" FT /db_xref="PDB:6AFC" FT /db_xref="PDB:6AFD" FT /db_xref="PDB:6AFE" FT /db_xref="PDB:6AFF" FT /db_xref="PDB:6AFG" FT /db_xref="PDB:6AFH" FT /db_xref="PDB:6AFI" FT /db_xref="PDB:6AFJ" FT /db_xref="PDB:6AFL" FT /db_xref="PDB:6E5Z" FT /db_xref="PDB:6M8Z" FT /db_xref="UniProtKB/Swiss-Prot:Q99497" FT /protein_id="AAH08188.1" FT /translation="MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQ FT CSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAA FT ICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFE FT FALAIVEALNGKEVAAQVKAPLVLKD" FT misc_difference 318 FT /gene="PARK7" FT /note="'T' in cDNA is 'C' in the human genome; no amino FT acid change. The chimpanzee genome agrees with the cDNA FT sequence, suggesting that this difference is unlikely to be FT due to an artifact." FT misc_difference 880..906 FT /gene="PARK7" FT /note="polyA tail: 27 bases do not align to the human FT genome." XX SQ Sequence 906 BP; 271 A; 181 C; 248 G; 206 T; 0 other; ggggtgagtg gtacccaacg ggccggggcg ccgcgtccgc aggaagaggc gcggggtgca 60 ggcttgtaaa catataacat aaaaatggct tccaaaagag ctctggtcat cctggctaaa 120 ggagcagagg aaatggagac ggtcatccct gtagatgtca tgaggcgagc tgggattaag 180 gtcaccgttg caggcctggc tggaaaagac ccagtacagt gtagccgtga tgtggtcatt 240 tgtcctgatg ccagccttga agatgcaaaa aaagagggac catatgatgt ggtggttcta 300 ccaggaggta atctgggtgc acagaattta tctgagtctg ctgctgtgaa ggagatactg 360 aaggagcagg aaaaccggaa gggcctgata gccgccatct gtgcaggtcc tactgctctg 420 ttggctcatg aaataggttt tggaagtaaa gttacaacac accctcttgc taaagacaaa 480 atgatgaatg gaggtcatta cacctactct gagaatcgtg tggaaaaaga cggcctgatt 540 cttacaagcc gggggcctgg gaccagcttc gagtttgcgc ttgcaattgt tgaagccctg 600 aatggcaagg aggtggcggc tcaagtgaag gctccacttg ttcttaaaga ctagagcagc 660 gaactgcgac gatcacttag agaaacaggc cgttaggaat ccattctcac tgtgttcgct 720 ctaaacaaaa cagtggtagg ttaatgtgtt cagaagtcgc tgtccttact acttttgcgg 780 aagtatggaa gtcacaacta cacagagatt tctcagccta caaattgtgt ctatacattt 840 ctaagccttg tttgcagaat aaacagggca tttagcaaaa aaaaaaaaaa aaaaaaaaaa 900 aaaaaa 906 //