Dbfetch
ID BC006305; SV 2; linear; mRNA; STD; HUM; 1101 BP. XX AC BC006305; XX DT 16-APR-2001 (Rel. 67, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Homo sapiens ubiquitin carboxyl-terminal esterase L1 (ubiquitin DE thiolesterase), mRNA (cDNA clone MGC:13301 IMAGE:4106766), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1101 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1101 RG NIH MGC Project RA ; RT ; RL Submitted (09-APR-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 3cfedc321f506a9cf7cd38ee97cf13ff. DR Ensembl-Gn; ENSG00000154277; homo_sapiens. DR Ensembl-Tr; ENST00000284440; homo_sapiens. DR Ensembl-Tr; ENST00000503431; homo_sapiens. XX CC On Dec 9, 2003 this sequence version replaced gi:13623416. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Rubin Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 17 Row: c Column: 15. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1101 FT /organism="Homo sapiens" FT /lab_host="DH10B-R" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_17" FT /clone="MGC:13301 IMAGE:4106766" FT /tissue_type="Muscle, rhabdomyosarcoma" FT /note="Vector: pOTB7" FT /db_xref="taxon:9606" FT gene 1..1101 FT /gene="UCHL1" FT /note="synonym: PGP9.5" FT CDS 37..708 FT /codon_start=1 FT /gene="UCHL1" FT /product="ubiquitin carboxyl-terminal esterase L1 FT (ubiquitin thiolesterase)" FT /db_xref="GOA:P09936" FT /db_xref="H-InvDB:HIT000032743.17" FT /db_xref="HGNC:HGNC:12513" FT /db_xref="InterPro:IPR001578" FT /db_xref="InterPro:IPR030297" FT /db_xref="InterPro:IPR036959" FT /db_xref="InterPro:IPR038765" FT /db_xref="PDB:2ETL" FT /db_xref="PDB:2LEN" FT /db_xref="PDB:3IFW" FT /db_xref="PDB:3IRT" FT /db_xref="PDB:3KVF" FT /db_xref="PDB:3KW5" FT /db_xref="PDB:4DM9" FT /db_xref="PDB:4JKJ" FT /db_xref="UniProtKB/Swiss-Prot:P09936" FT /protein_id="AAH06305.1" FT /translation="MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAP FT ACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD FT KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFI FT LFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKA FT A" FT misc_difference 1061..1101 FT /gene="UCHL1" FT /note="polyA tail: 41 bases do not align to the human FT genome." XX SQ Sequence 1101 BP; 303 A; 261 C; 275 G; 262 T; 0 other; cttccctagg ctatttctgc cgggcgctcc gcgaagatgc agctcaagcc gatggagatc 60 aaccccgaga tgctgaacaa agtgctgtcc cggctggggg tcgccggcca gtggcgcttc 120 gtggacgtgc tggggctgga agaggagtct ctgggctcgg tgccagcgcc tgcctgcgcg 180 ctgctgctgc tgtttcccct cacggcccag catgagaact tcaggaaaaa gcagattgaa 240 gagctgaagg gacaagaagt tagtcctaaa gtgtacttca tgaagcagac cattgggaat 300 tcctgtggca caatcggact tattcacgca gtggccaata atcaagacaa actgggattt 360 gaggatggat cagttctgaa acagtttctt tctgaaacag agaaaatgtc ccctgaagac 420 agagcaaaat gctttgaaaa gaatgaggcc atacaggcag cccatgatgc cgtggcacag 480 gaaggccaat gtcgggtaga tgacaaggtg aatttccatt ttattctgtt taacaacgtg 540 gatggccacc tctatgaact tgatggacga atgccttttc cggtgaacca tggcgccagt 600 tcagaggaca ccctgctgaa ggacgctgcc aaggtctgca gagaattcac cgagcgtgag 660 caaggagaag tccgcttctc tgccgtggct ctctgcaagg cagcctaatg ctctgtggga 720 gggactttgc tgatttcccc tcttcccttc aacatgaaaa tatatacccc cccatgcagt 780 ctaaaatgct tcagtacttg tgaaacacag ctgttcttct gttctgcaga cacgccttcc 840 cctcagccac acccaggcac ttaagcacaa gcagagtgca cagctgtcca ctgggccatt 900 gtggtgtgag cttcagatgg tgaagcattc tccccagtgt atgtcttgta tccgatatct 960 aacgctttaa atggctactt tggtttctgt ctgtaagtta agaccttgga tgtggtttaa 1020 ttgtttgtcc tcaaaaggaa taaaactttt ctgctgataa aaaaaaaaaa aaaaaaaaaa 1080 aaaaaaaaaa aaaaaaaaaa a 1101 //