Dbfetch
ID BC005631; SV 1; linear; mRNA; STD; MUS; 1469 BP. XX AC BC005631; XX DT 05-APR-2001 (Rel. 67, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 16) XX DE Mus musculus aminoacylase 1, mRNA (cDNA clone MGC:11593 IMAGE:3964138), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1469 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1469 RG NIH MGC Project RA ; RT ; RL Submitted (02-APR-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 5781c91d525a20b6fff86852ec650634. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 17 Row: o Column: 20 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 13384745. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1469 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="MGC:11593 IMAGE:3964138" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1469 FT /gene="Acy1" FT misc_difference 1..5 FT /gene="Acy1" FT /note="5 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 9 FT /gene="Acy1" FT /note="'T' in cDNA is 'G' in the mouse genome." FT misc_difference 12 FT /gene="Acy1" FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 78 FT /gene="Acy1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT CDS 124..1350 FT /codon_start=1 FT /gene="Acy1" FT /product="aminoacylase 1" FT /db_xref="GOA:Q99JW2" FT /db_xref="InterPro:IPR001261" FT /db_xref="InterPro:IPR002933" FT /db_xref="InterPro:IPR010159" FT /db_xref="InterPro:IPR011650" FT /db_xref="InterPro:IPR036264" FT /db_xref="MGI:MGI:87913" FT /db_xref="UniProtKB/Swiss-Prot:Q99JW2" FT /protein_id="AAH05631.1" FT /translation="MTTKDPESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQL FT GLSCQKIEVVPGFVITVLTWPGTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEG FT YIYARGSQDMKSVSIQYLEAVRRLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPE FT FQALRAGFALDEGLANPTDAFTVFYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKV FT ISSILAFREKERQRLQANPHLKEGAVTSVNLTKLEGGVAYNVVPATMSASFDFRVAPDV FT DMKAFEKQLQRWCQEAGEGVTFEFAQKFTEPRMTPTDDSDPWWAAFSGACKAMNLTLEP FT EIFPAATDSRYIRAVGIPALGFSPMNRTPVLLHDHNERLHEDIFLRGVDIYTGLLSALA FT SVPTLPGES" FT misc_difference 561 FT /gene="Acy1" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 638 FT /gene="Acy1" FT /note="'C' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'A' in cDNA, 'V' in the mouse genome." FT misc_difference 713 FT /gene="Acy1" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'R' in cDNA, 'Q' in the mouse genome." FT misc_difference 864 FT /gene="Acy1" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 1014 FT /gene="Acy1" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 1175 FT /gene="Acy1" FT /note="'A' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'Y' in cDNA, 'F' in the mouse genome." FT misc_difference 1182 FT /gene="Acy1" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 1339 FT /gene="Acy1" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'G' in cDNA, 'S' in the mouse genome." FT misc_difference 1347 FT /gene="Acy1" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 1442..1469 FT /gene="Acy1" FT /note="polyA tail: 28 bases do not align to the mouse FT genome." XX SQ Sequence 1469 BP; 346 A; 399 C; 419 G; 305 T; 0 other; cccacgcgtc cgccgggcgg ttttgagatt gggagcgacc tcggtggacc ctgagttccg 60 gccacagtct gagaggagag cacaggactg agacgtggag agagcaagcc agcacgcggc 120 gccatgacca ccaaggatcc cgagtctgag cacccctccg tgacgctctt ccgccagtac 180 ctgcgcatct gcactgtgca acccaatcca gactatggag gggccatcac cttcctggag 240 gagagagccc gccagctggg tctgagctgt cagaaaatag aggtggtgcc tggctttgtg 300 atcactgtgc tgacctggcc aggcaccaac ccgtcactcc cctccatctt gctaaactcc 360 cacacagatg tggtacctgt cttcaaggaa cattggcatc acgacccctt tgaggccttc 420 aaggattccg agggctacat ctatgctagg ggctcccagg acatgaagag tgtcagcatc 480 cagtacctgg aagctgtgag gaggctgaag agcgagggcc accgattccc taggaccatc 540 cacatgacct ttgtgcctga tgaggaggtc ggaggtcaca aggggatgga gttgtttgtg 600 aagaggcctg agttccaggc tctgcgggca ggcttcgctc tggacgaggg cctggccaac 660 cccacggatg cctttactgt cttttatagt gagcggagtc cttggtgggt acgggttacc 720 agcactggga agccaggcca tgcctcacgc ttcattgagg atacagctgc agagaagttg 780 cataaggtta taagctccat cttggcattc cgggagaagg aaaggcagag gctgcaggcg 840 aaccctcacc tgaaggaagg cgctgtgact tcggtgaatc tgaccaagct tgaaggtggc 900 gtggcctata atgtggtacc tgccactatg agtgccagct ttgacttccg agtggcacca 960 gatgtagaca tgaaggcctt cgagaagcag ctgcagagat ggtgccagga agcgggagag 1020 ggggtcacct ttgagtttgc tcagaagttt acagagcctc gaatgacacc cacggatgat 1080 tcagatccct ggtgggcagc tttcagcgga gcctgcaagg caatgaacct cactctggag 1140 ccagagatct ttcctgctgc cactgacagc cgctatatcc gagcggtggg gatcccagct 1200 ctgggcttct cgcccatgaa ccgcacacct gtcctgctac atgaccataa tgaacggctg 1260 catgaggata tatttctccg tggggttgac atatatacag gcctcctctc tgcacttgct 1320 agtgtgccca ccctgcctgg tgaaagttga gccccagggc ttccaactct tgtactctca 1380 gtcctaccac tgccaaggat ctgtttcccc tgcccagtaa taaagccagc attggatggg 1440 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 1469 //