Dbfetch
ID BC004689; SV 1; linear; mRNA; STD; MUS; 1229 BP. XX AC BC004689; XX DT 25-MAR-2001 (Rel. 67, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 16) XX DE Mus musculus N-acetylglucosamine kinase, mRNA (cDNA clone MGC:5669 DE IMAGE:3501470), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1229 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1229 RG NIH MGC Project RA ; RT ; RL Submitted (21-MAR-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; c6f0ab4f39dba2c173fbf471f5de8b3f. DR Ensembl-Gn; ENSMUSG00000034744; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0030941; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0030910; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0030838; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0030920; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C57BL6NJ_G0031380; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0030029; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0030607; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0030760; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0030713; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0030839; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0030749; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0031404; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0029744; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0030110; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000037376; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0078375; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0078451; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0078368; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0078394; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C57BL6NJ_T0078860; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0078590; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0077971; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0078133; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0078021; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0078161; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0078021; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0079103; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0078015; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0077124; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 9 Row: a Column: 22 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 9506738. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1229 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="Czech II" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Lu29" FT /clone="MGC:5669 IMAGE:3501470" FT /tissue_type="Mammary tumor metastatized to lung. Tumor FT arose spontaneously from a senescent normal mammary FT (clonal) outgrowth infected with the virus MMTV." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1229 FT /gene="Nagk" FT /note="synonym: Gnk" FT misc_difference 1..11 FT /gene="Nagk" FT /note="11 bases at the 5' end do not align to the mouse FT genome." FT CDS 76..1107 FT /codon_start=1 FT /gene="Nagk" FT /product="N-acetylglucosamine kinase" FT /db_xref="GOA:Q9QZ08" FT /db_xref="InterPro:IPR002731" FT /db_xref="InterPro:IPR039758" FT /db_xref="MGI:MGI:1860418" FT /db_xref="UniProtKB/Swiss-Prot:Q9QZ08" FT /protein_id="AAH04689.1" FT /translation="MAALYGGVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTDQC FT VERINEMVDRAKQKAGVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLI FT TTDAAGSIATATPDGGIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQA FT VKIVFDSIDNLEAAPHDIGHVKQAMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAE FT GAHQGDPLSRYIFRKAGEMLGRHVVAVLPEIDPVLFQGELGLPILCVGSVWKSWELLKE FT GFLLALTLGREQQAQNSFSSFTLMKLRHSSALGGASLGARHIGYHLPMDYSINAIAFYS FT YTF" FT misc_difference 1209..1229 FT /gene="Nagk" FT /note="polyA tail: 21 bases do not align to the mouse FT genome." XX SQ Sequence 1229 BP; 295 A; 302 C; 358 G; 274 T; 0 other; cccacgcgtc cggcgggagc gaagtcacgg ctagggtcga ggttgctacg gcggaccagc 60 ggtggcaacg gtagtatggc cgcgctttat ggtggcgtgg aagggggagg cacacggtcc 120 aaagtccttt tactttctga ggatgggcag atcctggcag aagcagatgg actgagcaca 180 aaccactggc tgattggcac agaccagtgt gtggagagga tcaatgagat ggtggacagg 240 gccaaacaga aggctggagt ggatcctctg gtgccccttc gaagcctggg cctgtccctg 300 agtggtgggg agcaggagga tgcagtgagg ctcctgattg aggagttgag gcaccgcttt 360 cccaacctga gtgaaaacta cttaatcacc acggatgcag caggttccat cgccacagcc 420 acaccggacg gtgggattgt gctcatctct ggaacaggct ccaactgtag gcttatcaac 480 cctgatggct ccgagagtgg ctgtggaggc tggggccaca tgatgggaga cgagggctca 540 gcctactgga ttgcacacca agctgtgaaa attgtgtttg attccatcga caacctggag 600 gcagctcctc atgatattgg ccatgtcaag caggccatgt tcgactattt ccaggtgcca 660 gatcggcttg gaatcctcac ccatttgtat agggactttg ataaatgcaa gtttgctgga 720 ttttgccaga aaattgcaga aggtgcacat cagggagacc ctctttccag gtacatcttc 780 aggaaggctg gagagatgct gggcagacat gttgtggcag tattgccaga gattgacccg 840 gttttgttcc aaggggagct tggcctcccc attctgtgtg tgggctcagt gtggaagagc 900 tgggagctcc tgaaggaagg ctttctcctg gcgctgacgc tgggccgaga gcagcaggca 960 cagaactcct tctccagctt caccctgatg aagttgcggc attcttctgc attggggggt 1020 gccagcctgg gggccaggca cattggatac caccttccca tggactacag tatcaatgcc 1080 attgccttct attcctatac cttctagagt ctgtccccct gcccaaccag ccaacaccga 1140 gagctgggag actttccttt ttaaaaaaca catatggaag aaaataaatg cactttactc 1200 cttccctaaa aaaaaaaaaa aaaaaaaaa 1229 //