Dbfetch
ID AY375870; SV 1; linear; genomic DNA; STD; HUM; 5425 BP. XX AC AY375870; XX DT 01-SEP-2004 (Rel. 81, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Homo sapiens 4AOH 100040 WAL FD MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*0602 allele, exons 1 through 4, and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5425 RA Wood J.M., Simons M.J., Ashdown M.L.; RT "Comparative haplotype analysis of polymorphism within the DQB1 gene. RT Continuous sequencing from promoter to exon 4"; RL Unpublished. XX RN [2] RP 1-5425 RA Wood J.M., Simons M.J., Ashdown M.L.; RT ; RL Submitted (25-AUG-2003) to the INSDC. RL GeneType Pty Ltd, 60-66 Hanover Street, Fitzroy, Victoria 3065, Australia XX DR MD5; 6943e3599b7d66af205fa371a55ae811. DR EPD; EP16068; HS_HLA-DQB1. XX FH Key Location/Qualifiers FH FT source 1..5425 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /haplotype="DQB1*0602 DQA1*01021 DRB1*15011" FT /cell_line="4AOH 100040 WAL FD" FT /db_xref="taxon:9606" FT gene <236..>5425 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT mRNA join(<236..344,1776..2045,4595..4876,5386..>5425) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /product="MHC class II antigen" FT CDS join(236..344,1776..2045,4595..4876,5386..>5425) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /product="MHC class II antigen" FT /db_xref="GOA:Q67AJ0" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q67AJ0" FT /protein_id="AAQ88044.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSG" FT exon <236..344 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /number=1 FT exon 1776..2045 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /number=2 FT exon 4595..4876 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /number=3 FT exon 5386..>5425 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*0602" FT /number=4 XX SQ Sequence 5425 BP; 1399 A; 1235 C; 1310 G; 1481 T; 0 other; caatttgaag acgtcacagt gccaggcact ggattgagaa ccttcacaaa aaaaatgtct 60 gcccagagac agatgaggtc cttcagctcc agtgctgatt ggttcttttc cgagggacca 120 tccaatcctg ccactcacgg aaacatccac aggtttttat tctttctgcc aggtacatca 180 gatccatcag gtccgagctg tgttgactac cactgctttt cccttcgtct cagttatgtc 240 ttggaagaag gctttgcgga tccccggaga ccttcgggta gcaactgtca ccttgatgct 300 ggcgatgctg agctccctac tggctgaggg cagagactct cccggtaagt gcagggcagc 360 tgctctccag agccgccact ctgggaacag gctctccttg ggctggggta tgggggatgg 420 tgatctctat gatcttggac acaatctttc atcaacattt cctctctctt gggaaagaaa 480 gctatgttgc attcccattt atcttttagt gatgagatga ggacaatcca atccccatcc 540 tacaggctta agcctggaag aggaggagag aggagagaaa gaggagataa agtgtacatt 600 tactaccagc gataggacaa agtgagcatg gggttatttt tgaagatatg aatttctcca 660 aagacacagc aggatttgtc atttaggcgt gccccaagac tgcctggact taggattatg 720 agatcctgca ttggaaaatg tgaggcagca atggtgtctg tagtctctgt atttgaggaa 780 aatttgtctc tattcctgac cgagtggagc atttgtggag gcaaaatctt ggtgctgagg 840 gaagctgact ggctgaccac agagagggag tcttcgggtt tcactgattt atgggcaaat 900 ggtgacttga gtgggattca gagacccgag ttaatggtgg actgaattta gtaggaagga 960 ggatgtaaag aagggaaata acacatattg tgaaaccact cacttcagac agaacaatac 1020 tttatataac ttctctctca ctccttctaa catcctgtgt gtagatatca tgattttctt 1080 ttacacaatt atacttgtga tatggatatt ctgttacata acctgcccaa actggtgact 1140 gccacagttt aattggaatc tagtttatca aattcaaaag cttgtgctct ttccatgaat 1200 aaatgtctct atctaggact cagaggtgta ggtcctttcc aacatagaag ggagtgaacc 1260 tcaacgggac ttgggagggt aaatctaggc atgggaagga aggtatttta cccagggacc 1320 aagagaatac gcgtgtcaga acgaggccag gcttaattcc tggacctatc tcgtcattcc 1380 gttgaactct cagatttatg tggataactt tatctctgag gtatccagga gcttcatgaa 1440 aaatgggatt tcatgcgaga acgccctgat ccctctaagt gcagaggtgc atgtaaaatc 1500 agcccgactg cctcttcgct gggttcacag gctcaggcag ggacagggct ttcctccctt 1560 tcctggatgt aggaaggcag attccagaag cccgcaaaga aggcgggcag agctgggcag 1620 agccgccggg aggatcccag gtctggagcg ccaggcacgg gcgggcggga actggaggtc 1680 gcgcgggcgg ttccacagct ccaggccggg tcagggcggc ggctgcgggg gcggccgggc 1740 tggggcctga ctgaccggcc ggtgattccc cgcagaggat ttcgtgttcc agtttaaggg 1800 catgtgctac ttcaccaacg ggacggagcg cgtgcgtctt gtgaccagat acatctataa 1860 ccgagaggag tacgcgcgct tcgacagcga cgtgggggtg taccgcgcgg tgacgccgca 1920 ggggcggcct gatgccgagt actggaacag ccagaaggaa gtcctggagg ggacccgggc 1980 ggagttggac acggtgtgca gacacaacta cgaggtggcg ttccgcggga tcttgcagag 2040 gagaggtgag cgtcgtcgcc cctccgtgag gcccaccctt ggccgagacc ccgagtttct 2100 gtgccgggag gggcgatggg ggcgaggtct ctgaaatctg agcccagttc attccacccc 2160 aggggaaagg aggcggcggc ggggtggtgg gggcaggtgc atcggagggg cggggaccta 2220 gggcagagca gggggacaag cagagttggc caggctgcct agtgtccccc ccagcctccc 2280 cgtccgtcgg cctcgtcctc cgctctgcac gtttctcgcc tcgtgcctta tgtgtttgcc 2340 tcctcgtacc ttaccttcgc taagcagttc tctctgcccc cagtgcccac cctcttcccc 2400 tgcccgccgg cctcgctagc actgccccac ccagcaaggc ccacgtgcgc agcttgcgcc 2460 gcaggaagct tcaggcttgg cctggtggag ttagggctgc cccacagctg cgcgcagggc 2520 atccagcaat tacagttgcg aaataagata ttttgacttt ttggcttcaa atcattattc 2580 atcgtaattc tgttttctta aatggctacc actaatggcg gagatctttg aggcgagaga 2640 ctgtttaatt attgcatgcc tggtacctga cacattgact ggtatgtggt gtgagctcaa 2700 tgatcttctg ttaaattcat gaataaatgt actcagctgc caatccagtt aggttcaaga 2760 aaaaaacaga ggcttacaaa tgaactttat caattatttt ctaacatttt gcttaatgct 2820 ttcaagtaaa ctcttactga cttggatctt aatagaattt gtgaatacaa agtctgagga 2880 aaatgtgttt gctaaaaata aaaacaatgc ttgaatgatg ttgtaaggca gagttttaat 2940 ttcttagaaa agctgaacaa atagcactat gcaaagatca gaagtttggg aataaatagg 3000 ttgaagctat taaattattg gataaaaata gtttcaggtt gcttttggcc taggttatcc 3060 cctccccccc atcactatcc acttcaggaa taaacattct gaaagtcaat tttacccatt 3120 caggaagcac ttatttctag acagttgcct tatcaaatac catctatgtt atgtcattta 3180 atctcacagc tacctgtgca ttagagatta gcatcaccac tttatatatc ctaatattgg 3240 tacatgataa acactttaag taatcagccc acaattactc accaagatct taagcctccc 3300 aaagtacaca acattcttat gttcctcact acacatatgt agagtctaag ggatgtaagg 3360 ccttgttaaa gccagttttg accagaagca gcaatgagtc tattcctgtt tgttctgtgt 3420 gttaatgcgg cattgaaaat tcatgattaa tcaatcccta gtctgacccc ggtgttatct 3480 atgcaggttc acaaaacttt tagtttgctt tacactccct tgccttcttt tgactcacat 3540 cctaatgcca gcaagtactt atatttttgc tatttcagtt ttatttccat aaaatttatt 3600 ttatcatctt ttctcataaa tttgtgccct ctatttttac tcccagtctg ttgaagatga 3660 acaaatctta taaggccaca tagctgactc tgatttcagt tggcctccag gaaggagaac 3720 ctaaagaaaa gttcaagtcc aagcagaaac catgattcct tccggatgat ggctcaagag 3780 tgccatttaa ttggggtgcc acctgctgac ctcagcaaat cccagttata tgtatatgtt 3840 cacattacag gctcattagc ccaggccgac ctctgcacgg atctcagaat attttctgtg 3900 gagaacatac acgataatgt ctgatttcag aacaagaaag taattgtcaa tagcaaggaa 3960 atggagtagg gtagacagct agtaattaaa ctcacttgtg cgttaaaaag aaattaagga 4020 aaaaaagaaa atgagagaac atattactaa ataaagaaag cacacattaa atatttgcta 4080 tagtttcaca ctaagagaat aaaggaaatg tgataaagtg gcctaaaagg aaaggatgag 4140 atgtgtaaaa gaggcgggga aagatgtgtc atttttttta ctatgagcag caatctgaga 4200 agataaagga attgagttgt ggacaaacat gatgtttgat caagggttat ttgttttgaa 4260 ggcctgccta cttttttttc aaatattaca aacttttgaa ataacattct actttttttt 4320 caaatattac aaacttttga aataacattc tttttgtttt ttgctgtctg ttactagatt 4380 gcacattcta taaatgcagg gaccatagta tgttatttat ctttgaattc tcagtgattg 4440 tcaaatttat atttgttgaa tgaaccttaa tccaagactt cgactccagg tatctttcca 4500 ctctggtcca aggagggatc cttcctcatg gtagacgtgg tgtgtgttct cacatctcac 4560 tcctatgtct tttcctgtct gttactgccc tcagtggagc ccacagtgac catctcccca 4620 tccaggacag aggccctcaa ccaccacaac ctgctggtct gctcggtgac agatttctat 4680 ccaggccaga tcaaagtccg gtggtttcgg aatgatcagg aggagacagc cggcgttgtg 4740 tccacccccc ttattaggaa tggtgactgg actttccaga tcctggtgat gctggaaatg 4800 actccccagc gtggagatgt ctacacctgc cacgtggagc accccagcct ccagagcccc 4860 atcaccgtgg agtggcgtaa ggggatattg agtttctgtt actatgggcc cacaagacaa 4920 agagctcctt ctgacccatt ccttcccatc tcttatccct gatgtcacta ctgagctggg 4980 aatcacagga gactagagca cctcttgctc catggcaagt gcatcagaag aatcctggtc 5040 tcatcacctt tccagatgct agggaaatta ctctacatac tgttgctctg aatcccagtc 5100 ctgatagctc tgagggactg attcttaggg ctggtgactg ggatcttagg gtctaaggtt 5160 atggatgagt tcttgaagag cagagatttg cttccccact ctctcaccta ttcactgtat 5220 ccaaggacct attggctggt ctttcccctc cttaggggtg gtctgaatgg agaactaggt 5280 tcctttgatg ccttcacctt ctgcacctca gactggactt caactcctca gcagggatgc 5340 tatggggtgt ggggacaaac acagacactc agttctgctc tttaggggct cagtctgaat 5400 ctgcccagag caagatgctg agtgg 5425 //