Dbfetch
ID AK164837; SV 1; linear; mRNA; HTC; MUS; 3332 BP. XX AC AK164837; XX DT 09-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, DE clone:D930009N18 product:gamma-aminobutyric acid (GABA-A) receptor, subunit DE theta, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3332 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; b3b15d85e9b91bf27c4e31b34a6b217b. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=D930009N18 XX FH Key Location/Qualifiers FH FT source 1..3332 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="15 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D930009N18" FT /tissue_type="head" FT /db_xref="taxon:10090" FT CDS <1..248 FT /codon_start=3 FT /transl_table=1 FT /note="gamma-aminobutyric acid (GABA-A) receptor, subunit FT theta (MGD|MGI:1888498 GB|AK038859, evidence: BLASTN, 100%, FT match=961)" FT /note="putative" FT /note="start codon is not identified" FT /db_xref="MGI:MGI:1888498" FT /db_xref="UniProtKB/TrEMBL:Q3TP00" FT /protein_id="BAE37937.1" FT /translation="TQLATGESLSDLPSTSEQTVPECTIHFHGFLTNDSIIPIKIHSRS FT DACDDEDSEESLSSEESHGHGSSHTGRLKLQISQSA" FT regulatory 3317..3322 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 3332 FT /note="putative" XX SQ Sequence 3332 BP; 946 A; 720 C; 686 G; 980 T; 0 other; ggactcaatt ggccactgga gaaagcctga gtgatctgcc ctccacctct gagcaaacag 60 tgcctgagtg taccattcac tttcatggct ttcttactaa tgacagtatt atccccatca 120 aaatccacag ccgatctgat gcctgtgatg atgaagactc cgaagaaagc ctaagctctg 180 aggagagcca tggccatgga agcagccaca ctggaaggct caagctccag attagccaga 240 gtgcatagta agtgtcaacg agctccctga cccatcacat cgttggatcc tcacaggagc 300 cctgtgagcc agggaagaca aagcaccttg tccccagtgt tccaaggaaa atgtggagct 360 tgtgtgccat gcttaaagat gcttgttctt ttccttatct gcttaactct caactaactg 420 ccccttccct gtgctcaagc tgccaagctc atggacagca cccggaacat ctctatatga 480 agaggccagc tggtgaacat ggagcctact cagcagggct cctgataaga gtgggatgag 540 cctgtacacc aactttccag gaagcaccag cttattgatg gaggtcatga gggagctttc 600 ccaagcactc aacctatatc cccccttcct ctataggcag cctctccttc agccctatac 660 tcctctgccc acccgccttc ttaagtatac tcctgtactt ctatatttat atgtttctgc 720 gtatctctga ggatgactat gtatgtattc aggtaggtat atgtgctatc catacaacca 780 tctgagaagc tgtactagtg ccaatctaca ctgtgtggat aaatagtatg tatgcatctc 840 tatgagagtg tcacttgtag tgtcacttat agtaacagag ctgaatgcat tctgcataca 900 ttcatagaat gtgcatgtct atatacctgt gtttgtcaaa gttagttagt gtaaaaggat 960 atacataaaa aaaaaaaaac acatgtattc cctttaggag gttcttgtag aaacagcatg 1020 actctagtga cctgttttag cagagtgggg acagtcttag ttagctggac tgattaactc 1080 tttcttttca gttcttgaga gccaggtgga cctattggta aagtacattt gtagctaatc 1140 cttggacagg cttggctgct tgaacaggcc cacaaatcta ccttgtgttt ggagtttgaa 1200 cattccttac tttaacttga ttccgggaaa gactcagaga agtaaaaatg gacaggagaa 1260 ctaagtactg aatagatgat ctcagtattg tctcttgtcc atgcataggc acaattctag 1320 ccttttatgc atacacaccc agacacatat acctactcca ttacatgtgc atacatatat 1380 ttcatgagca cccacgcact gggttatatt tacaagcatg tccagatata tacacacaca 1440 aataaacaca cacacacaca tacttttaaa acaactcaaa acaaggatat ttttaccaaa 1500 atatctaaga ttgtttattt ggggggcggg gggagaaccc agcataaaac ggtccagatt 1560 aaagggagag caaaagctct cctctggaat ctgagcattc gttagatgtg cacttggatc 1620 tggagaccta tataatcttg tagtgttgaa cacatcactg gactaaagtt actaagaggg 1680 attagagtag tgggaccaac gataaagtag agaagaggca gagaggccag ttgtaaatat 1740 ccatgtagct agatatagca taccctaaaa agactatttt gccctaatgt gctgcaatga 1800 gagcagttaa actgcaattc atactatgtg aggttacatg taccatggag atctggtaat 1860 gacagctttt caggaacttg aatcatctgg gttgtttttg tttttttgtt ttttgttttt 1920 gttgttgttg ttgttgttgt tgttgttgtt gttatttttc atggctatgg tctttcttac 1980 ttgaaagttg ccagatctct ccttgtattc tctgtgtggt ctgttgttta tcttcattaa 2040 gccctgtatc ctgctgccct cagccccttt tcagccatac aggcacaccc tctctattgg 2100 ctgcctatgt ctcctcccaa acttcctcca acaccaagta gttgttgaag tgcagagcat 2160 ctgagcagtg ctcctgaggt tcagtcagtc caacagcttg gaaagaagga agagccttac 2220 taagtctgag atggagcaac cccactttac tactctattc tgtcttgtct taccctctcc 2280 tgtcccccta gaattcctgt ctgagaaaga ccccagcttt ctgtctttcc aatgcatcat 2340 tttattgtag aaatatgtga tataattcct gcccagcttg atttgcactg tggggtgtct 2400 ctgcagagtt tggccattgt agtcttacaa tttgtatcat ccttattcat agcaaggctg 2460 caaactcttg acatacctaa accaagtttt gctgagattg tgaccattcc taatgaggat 2520 tccttactct gtatatacag cagcaatgct ttcaagctat taagtactga aagccctcac 2580 taagcactcc acctgcatgc taccctgtgg tagtaagcag gaactttcta gctactccac 2640 agcccagcat tcaaagtaat tatcccttgt cctactgaaa gtgcagtgtg tttgtgtttc 2700 tgtttgtgtt tgttgtatgg tgtcctgaga ttaatatgaa tctacatttt cagtgttggg 2760 ttttcagagg agggaaggaa tgatgttaaa atatctctct ggtattcttc aataataaaa 2820 tatgccagct ggtcaaggtc atctgtgtag aactctgggt cagaattttc acccactatc 2880 atgctagact atatccctga gatcagtatt cattagtaaa ggcaacttac cagaattctg 2940 cacagtaata gaagccaact tcagataata ccagaggagt ctttcagtgg ctattaagtt 3000 agtaacattc tgggagcata tgaactatgg taaagtcaca tacatacaga tcttcagtag 3060 tggtgtaggg ccaagacaat aaaaagtaag aaaatagaat gaccaacagc caggtaaccc 3120 gggtgagctg acctgcaagg gccacagaag cagagcctta ctagataagt gggtgcccat 3180 gttgagctca ttaattgaca ttgttgtgag aaagagacct tgaccagtcc ggacttcaag 3240 aaagtgaaac atgaaagagc ataaaatcat gcttctgaaa aatatacttt aaaaacatgt 3300 aaatagcaaa aggcaaaata aagatctata at 3332 //