Dbfetch
ID AK085754; SV 1; linear; mRNA; HTC; MUS; 2316 BP. XX AC AK085754; XX DT 19-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN DE full-length enriched library, clone:D730049G12 product:transferrin, full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2316 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c5c14339609b260574e8cc4384e832d3. DR Ensembl-Gn; ENSMUSG00000032554; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0035196; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0035176; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0035108; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0035169; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0034879; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0035689; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0034191; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0034848; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0035009; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0034957; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0035085; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0034996; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0035711; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_WSBEiJ_G0034311; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000035158; mus_musculus. DR Ensembl-Tr; ENSMUST00000112645; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0093929; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0094013; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0093966; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0093939; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0093516; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0094453; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0094114; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0093435; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0093645; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0093499; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0093653; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0093475; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0094780; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_WSBEiJ_T0092513; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=D730049G12 XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="female" FT /dev_stage="10 days lactation, adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D730049G12" FT /tissue_type="mammary gland" FT /db_xref="taxon:10090" FT CDS 56..2149 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="transferrin (MGD|MGI:98821 GB|J03299, evidence: FT BLASTN, 99%, match=393)" FT /db_xref="GOA:Q921I1" FT /db_xref="InterPro:IPR001156" FT /db_xref="InterPro:IPR016357" FT /db_xref="InterPro:IPR018195" FT /db_xref="InterPro:IPR030685" FT /db_xref="MGI:MGI:98821" FT /db_xref="UniProtKB/Swiss-Prot:Q921I1" FT /protein_id="BAC39532.1" FT /translation="MRLTVGALLACAALGLCLAVPDKTVKWCAVSEHENTKCISFRDHM FT KTVLPPDGPRLACVKKTSYPDCIKAISASEADAMTLDGGWVYDAGLTPNNLKPVAAEFY FT GSVEHPQTYYYAVAVVKKGTDFQLNQLEGKKSCHTGLGRSAGWVIPIGLLFCKLSEPRS FT PLEKAVSSFFSGSCVPCADPVAFPKLCQLCPGCGCSSTQPFFGYVGAFKCLKDGGGDVA FT FVKHTTIFEVLPEKADRDQYELLCLDNTRKPVDQYEDCYLARIPSHAVVARKNNGKEDL FT IWEILKVAQEHFGKGKSKDFQLFSSPLGKDLLFKDSAFGLLRVPPRMDYRLYLGHNYVT FT AIRNQQEGVCPEGSIDNSPVKWCALSHLERTKCDEWSIISEGKIECESAETTEDCIEKI FT VNGEADAMTLDGGHAYIAGQCGLVPVMAEYYESSNCAIPSQQGIFPKGYYAVAVVKASD FT TSITWNNLKGKKSCHTGVDRTAGWNIPMGMLYNRINHCKFDEFFSQGCAPGYEKNSTLC FT DLCIGPLKCAPNNKEEYNGYTGAFRCLVEKGDVAFVKHQTVLDNTEGKNPAEWAKNLKQ FT EDFELLCPDGTRKPVKDFASCHLAQAPNHVVVSRKEKAARVKAVLTSQETLFGGSDCTG FT NFCLFKSTTKDLLFRDDTKCFVKLPEGTTPEKYLGAEYMQSVGNMRKCSTSRLLEACTF FT HKH" FT regulatory 2295..2300 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 2316 FT /note="putative" XX SQ Sequence 2316 BP; 574 A; 587 C; 633 G; 522 T; 0 other; ggcagaagcg ggtcggtctg tactccccgc tcctcgccac acacacaccg agaggatgag 60 gctcaccgtg ggtgccctgc tggcctgcgc tgccctgggg ctgtgtctgg ctgtccctga 120 caaaacggtc aaatggtgcg cagtgtcaga gcacgagaat accaagtgca tcagcttccg 180 tgaccacatg aagaccgtcc ttccgcctga tggcccccgg cttgcctgtg tgaagaaaac 240 ctcctatccg gattgcatca aggccatttc tgcaagtgaa gccgatgcta tgaccttgga 300 tgggggttgg gtgtacgatg ccggcctgac tccgaacaac ctgaagcccg tggcggcgga 360 gttttatgga tcagtggaac atccacagac ctactactac gctgtggctg tggtaaagaa 420 gggaacagac ttccagctga accagctcga aggcaagaag tcctgccaca caggcctggg 480 aaggtctgca ggctgggtca tccccattgg cttgctcttc tgtaagctgt cggagccccg 540 cagtcctctt gagaaagctg tgtccagttt cttctcgggc agttgtgtcc cctgtgcaga 600 tccagtggcc ttccccaaac tgtgtcaact gtgcccaggc tgtggctgct cctccactca 660 accattcttt ggctacgtag gcgcattcaa gtgtctgaaa gatggcggtg gggatgtggc 720 ctttgtcaag cacacaacca tatttgaggt cttgccggag aaggctgaca gggaccaata 780 tgaactgctc tgccttgaca atacccgcaa gccagtggat cagtatgagg attgctacct 840 ggctcggatc ccttctcatg ctgttgtggc tcgaaaaaac aatggcaagg aagacttgat 900 ctgggagatt ctcaaagtgg cacaggaaca ctttggcaaa ggcaaatcaa aagacttcca 960 actgttcagc tctcctcttg ggaaagacct gctgtttaaa gattctgcct ttgggctgtt 1020 aagggtcccc ccaaggatgg actacaggct gtaccttggc cataactatg tcactgccat 1080 tcggaatcag caggaaggcg tgtgcccgga gggctcgatc gacaactcgc cagtgaagtg 1140 gtgtgcactg agtcacctgg agagaaccaa gtgtgacgag tggagcatca tcagtgaggg 1200 aaagatagag tgtgagtcag cagagaccac tgaggactgc attgaaaaga ttgtgaacgg 1260 agaagcggac gccatgactt tggatggagg acatgcctac attgcaggcc agtgtggtct 1320 agtgcctgtc atggcagagt actacgagag ctctaattgt gccatcccat cacaacaagg 1380 tatctttcct aaagggtatt atgccgtggc tgtggtgaag gcatcggaca ctagcatcac 1440 ctggaacaac ctgaaaggca agaagtcctg ccacactggg gtagacagaa ccgctggttg 1500 gaacatccct atgggcatgc tgtacaacag gatcaaccac tgcaaattcg atgaattttt 1560 cagtcaaggc tgcgctcccg ggtatgagaa gaattccacc ctctgtgacc tgtgtattgg 1620 cccactcaaa tgtgctccga acaacaaaga ggaatataat ggttacacag gggctttcag 1680 gtgtctcgtt gagaaaggag atgtagcctt tgtgaaacac cagactgtcc tggataacac 1740 cgaaggaaag aaccctgccg aatgggctaa gaatctgaag caggaagact tcgagttgct 1800 ctgccctgat ggcaccagga agcctgtgaa agattttgcc agctgccacc tggcccaagc 1860 tccaaaccat gttgtggtct cacgaaaaga gaaggcagcc cgggttaagg ctgtactgac 1920 tagccaggag actttatttg ggggaagtga ctgcaccggc aatttctgtt tgttcaagtc 1980 caccaccaag gaccttctgt tcagggatga caccaaatgt ttcgttaaac ttccagaggg 2040 taccacacct gaaaaatact taggagcgga gtacatgcaa tctgtcggta acatgaggaa 2100 gtgctcaacc tcacgactcc tggaagcctg cactttccac aaacattaaa atccaagagg 2160 tgggttgcca ctgtggtgga gacagatgct ccctcccgtg gcccatgggc ttctcttggt 2220 cttcatgccc tgaggggttg gggctaactg gtgtagtctt cgctgctgtg ccttaccaca 2280 tacacagagc acaaaataaa aacgactgct gacttt 2316 //