Dbfetch
ID AK081908; SV 1; linear; mRNA; HTC; MUS; 1889 BP. XX AC AK081908; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, DE clone:C130086F02 product:vesicle-associated membrane protein, associated DE protein B and C, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1889 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c64daed9cd015d1aa10fbd631faad5da. DR Ensembl-Gn; ENSMUSG00000054455; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0026961; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0026928; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0026899; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0026937; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0026679; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0027384; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0026138; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0026656; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0026794; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0026760; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0026895; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0026779; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0027441; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0025874; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0026210; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000067530; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0059580; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0059613; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0059554; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0059544; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0059235; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0060013; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0059521; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0059209; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0059317; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0059294; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0059423; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0059281; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0060197; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0059094; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0058514; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=C130086F02 XX FH Key Location/Qualifiers FH FT source 1..1889 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="16 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="C130086F02" FT /tissue_type="head" FT /db_xref="taxon:10090" FT CDS 52..783 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="vesicle-associated membrane protein, associated FT protein B and C (MGD|MGI:1928744 GB|NM_019806, evidence: FT BLASTN, 99%, match=732)" FT /db_xref="GOA:Q8BH80" FT /db_xref="InterPro:IPR000535" FT /db_xref="InterPro:IPR008962" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR016763" FT /db_xref="InterPro:IPR030226" FT /db_xref="MGI:MGI:1928744" FT /db_xref="UniProtKB/TrEMBL:Q8BH80" FT /protein_id="BAC38368.1" FT /translation="MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVK FT TTAPRRYCVRPNSGVIDAGASLNVSVMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEA FT VWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKIIPTSASKTEAPAAAKSLTSPLDD FT TEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRVRKAMPSNSPVAALAATGKEEGLSA FT RLLALVVLFFIVGVIIGKIAL" XX SQ Sequence 1889 BP; 468 A; 449 C; 546 G; 426 T; 0 other; gacccaggcc gccgcccccc gcccgcgccg tcgcccccga cggggaggac catggcgaag 60 gtggaacagg tcctgagcct cgagccacaa cacgagctca agttccgagg tcccttcact 120 gatgttgtca ccaccaacct aaagcttggc aacccaacag accgaaatgt gtgttttaaa 180 gtgaagacca cagcacctcg caggtactgc gtgcggccca acagtggggt cattgatgcc 240 ggggcctctc tcaatgtgtc tgtgatgtta cagcctttcg attatgatcc caatgagaaa 300 agtaaacaca agtttatggt tcagtctatg tttgctccgc ctgacacttc tgatatggag 360 gcagtatgga aggaggcaaa accggaagac cttatggatt caaaacttag atgtgtgttt 420 gaattgccag cagaaaatgc taaaccacat gatgtagaaa taaataaaat catacctacg 480 agtgcatcca agacagaagc accggcagcc gcaaagtccc tgacatcgcc cctcgatgac 540 acagaagtaa agaaggtgat ggaagagtgc aggcggctgc agggggaggt gcagaggctt 600 cgggaggaga gcaggcagct caaggaagaa gacggacttc gggtgaggaa ggcgatgccg 660 agcaacagcc ccgtggcggc tctggcggcc actgggaagg aggagggcct gagcgcccgg 720 ctgctggccc tggtggttct gttctttatc gttggtgtca ttatagggaa gattgccttg 780 taggggccgc atgcgaagga tggcaggttg gattgatgga tctaccacac catgggattc 840 aaatttatca taaccatgcg taaaaagaaa ttaatgtatg acggcatctc acaggtcttg 900 cctttaaata cccctcccca tgcacacaca aatgcacaca caaatatagc ataatataat 960 gatcttttag aaagttaaaa atgtataggg aatggatggg gaaagaatgg tctgttgccg 1020 taggacgggc cgtgattaac cacagtggca tcttgtagct gtcacgctca attcgggtag 1080 gcctgggcac gtgttgctag atcactctct taaagcaaga agctcctcct cgcatgttgg 1140 ggctggcccg tgggagcggg agtcctgcaa ggtggggcga gctgtctttt tcttacccac 1200 gtggcttccc caggcctgct gttctgtcca ggcatcgtct cctcaggcct acagagctgc 1260 aggtgccaaa gtgcattgca cagaggccac atctcgtgta cctgtgggtc gtgtgggaga 1320 gacatgagtg gaccagcggg tccaacacag ggaaatccaa gtctgtgctc tgttctcttg 1380 aagggaccaa gctaaattac cgctggttca agtagtgaac cgagttgttc tcggagatgg 1440 ctgatgcaca tgtaacctat ttcatctcgt gtgttcctgc tgccaccaga gcacaggcag 1500 tgagtgctgc agaccgccag tgaggagctg ctgctgtggg ctctggaggt ctgagggaag 1560 gggagggtct gagtcaggaa gtgttttgtt gtaggtcagt aatagctgcc ctgaggagga 1620 acgctctttt taatgacagt cagctctgga ttacccagtc ttctagattg ccctaccatc 1680 catccttcta aaacataggc cagccttgac ctgcccttct caggatgagt gagtcaggct 1740 gcagagggtg aagggcatag agggggtggg gtggggtggg ggagccctca gcaaatccat 1800 ctgctggtga tgaagagtcc tgactgtgaa ttaatttcat gccataaaag accgatccag 1860 ttctgctcaa ctatgtagca tcttaaagg 1889 //