Dbfetch
ID AK048276; SV 1; linear; mRNA; HTC; MUS; 3011 BP. XX AC AK048276; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, DE clone:C130045M17 product:similar to CALCIUM-ACTIVATED CHLORIDE CHANNEL-2 DE [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3011 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 54c940d5b921b30f2401fb0e5c7f2677. DR Ensembl-Gn; ENSMUSG00000036960; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0027957; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0027916; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0027882; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0027928; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027658; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0028371; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0027111; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0027633; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0027773; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0027740; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0027884; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0027773; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0028430; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0026834; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0027191; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000040465; mus_musculus. DR Ensembl-Tr; ENSMUST00000198993; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0064150; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0064178; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0064121; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0064101; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0063790; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0064595; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0064106; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0063750; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0063864; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0063821; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0064006; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0063823; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0064815; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0063641; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0063048; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=C130045M17 XX FH Key Location/Qualifiers FH FT source 1..3011 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="16 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="C130045M17" FT /tissue_type="head" FT /db_xref="taxon:10090" FT CDS 69..2897 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="similar to CALCIUM-ACTIVATED CHLORIDE CHANNEL-2 FT [Homo sapiens] (SPTR|Q9Y6N2, evidence: FASTY, 72.1%ID, FT 100%length, match=2826)" FT /db_xref="GOA:Q8BG22" FT /db_xref="InterPro:IPR002035" FT /db_xref="InterPro:IPR004727" FT /db_xref="InterPro:IPR013642" FT /db_xref="InterPro:IPR036465" FT /db_xref="MGI:MGI:2139758" FT /db_xref="UniProtKB/Swiss-Prot:Q8BG22" FT /protein_id="BAC33291.1" FT /translation="MTHRDSTGPVIGLKLVTLLFTLSPELLFLGAGLKLKENGYDGLLV FT AINPRVPEDLKLITNIKEMITEASFYLFNATKRRVFFRNVQILVPATWTDHNYSRVRQE FT SYDKANVIVAEQSEEHGDDPYTLQHRGCGQEGRYIHFTPSFLLNDELAAGYGARGRVFV FT HEWAHLRWGVFDEYNNDKPFYVNGRNEIQVTRCSSDITGVFVCEKGLCPHEDCIISKIF FT REGCTFLYNSTQNATGSIMFMPSLPSVVEFCNESTHNQEAPNLQNQVCSLRSTWDVITA FT SSDLNHSLPVHGVGLPAPPTFSLLQAGDRVVCLVIDVSRKMAEGDRLLRLQQAAELYLM FT QVVEAHTFVGIVTFDSKGEIRASLQQIYSDDDRKLLVSYLPTAVSTDAETNICAGVKKG FT FEVVEERNGRADGSVLILVTSGADEHIANCLLTSMNSGSTIHSMALGSSAARKVGELSR FT LTGGLKFFIPDKFTSNGMTEAFVRISSGTGDIFQQSLQVESVCETVQPQHQLADTMTVD FT SAVGNDTLFLVTWQTGGPPEIALLDPSGRKYNTGDFIINLAFRTASLKIPGTAKHGHWT FT YTLNNTHHSPQALKVTVASRASSLAMSPATLEAFVERDSTYFPQPVIIYANVRKGLHPI FT LNATVVATVEPEAGDPVVLQLLDGGAGADVIRNDGIYSRYFSSFAVSGSYSLTVHVRHS FT PSTSTLALPVPGNHAMYVPGYITNDNIQMNAPKNLGHRPVKERWGFSRVSSGGSFSVLG FT VPDGPHPDMFPPCKITDLEAMKVEDDVVLSWTAPGEDFDQGQTTSYEIRMSRSLWNIRD FT DFDNAILVNSSELVPQHAGTRETFTFSPKLVTHELDHELAEDAQEPYIVYVALRAMDRS FT SLRSAVSNIALVSMSLPPNSSPVVSRDDLILKGVLTTVGLIAILCLIMVVAHCIFNRKK FT RPSRKENETKFL" XX SQ Sequence 3011 BP; 820 A; 736 C; 737 G; 718 T; 0 other; gacattgatc agctgactca aggtacccag caggctcccc gtgaataaac cagaggtttc 60 actgcaagat gacccacagg gacagcacag gacctgtcat cgggctgaaa cttgtgaccc 120 ttctgttcac cctaagtcca gaacttctgt tcctgggagc tggattgaag ctgaaagaga 180 atggctatga tggattgctt gttgccatca atccccgggt acccgaggat ctgaagctga 240 ttacaaacat taaggaaatg ataaccgaag cttcctttta cctgttcaat gcgaccaaga 300 ggagggtgtt tttcagaaat gtacagattt tagtacctgc cacttggacg gatcataatt 360 acagtagagt aagacaagaa tcctatgaca aggcaaatgt catagtggct gagcagagtg 420 aggaacacgg agatgatccc tacaccctac agcacagagg gtgtgggcaa gaggggagat 480 acatccactt cacccccagc ttcctactca acgatgagtt agccgcaggc tatggtgcgc 540 gaggcagagt gtttgtccac gagtgggccc atctccgctg gggtgtgttc gatgaatata 600 acaacgacaa accgttctac gtgaatggac ggaatgagat tcaagtcacc aggtgttcat 660 ctgacattac aggcgttttt gtgtgtgaaa agggcctctg cccccatgaa gactgcatta 720 ttagcaagat ttttagggaa ggatgcacat tcctctacaa cagcacccag aatgcaactg 780 gatcaataat gttcatgcca agtttacctt ctgtggttga attctgtaac gaaagtacac 840 acaaccaaga agctccaaac ctccagaacc aagtgtgcag cctcagaagc acttgggacg 900 tgatcacagc ctcctccgac ctgaaccata gcctccccgt gcatggggtt ggacttccag 960 cccctcccac gttctccctc ttgcaggctg gtgaccgagt ggtctgctta gtgattgatg 1020 tgtccaggaa gatggcagag ggagacagac tgctccgact tcaacaagca gccgaactgt 1080 acttgatgca ggttgtcgaa gctcacactt tcgtgggcat tgtcactttt gatagcaaag 1140 gagaaatccg agcctcgctg cagcaaattt acagtgacga tgaccggaag ctgctggttt 1200 catacctgcc gaccgccgtg tccactgacg cagaaacgaa catctgtgca ggggttaaga 1260 aaggctttga ggtggttgag gagcggaatg gaagagctga cggctctgtc ctgatattag 1320 tgaccagtgg agcagatgaa cacattgcca actgcctgct cacctcgatg aacagtggat 1380 ccaccattca ctccatggcc ctgggttcct ctgcagccag aaaagtgggg gaattatcgc 1440 gtcttacagg aggtctaaag ttcttcattc cagataaatt tacttctaat ggaatgactg 1500 aagctttcgt tcgaatctct tctggaacag gagacatttt ccagcaaagc ttacaggttg 1560 agagcgtgtg cgaaactgtg caaccccagc accagctggc ggatactatg actgtggata 1620 gcgccgtggg caatgacaca ctttttctag tcacgtggca gactggtggc ccccctgaga 1680 ttgcattatt ggatcctagc ggaagaaaat acaacactgg tgactttatc atcaacctgg 1740 cctttcggac agccagcctt aagattccag ggacagctaa gcatgggcac tggacttaca 1800 cgctgaacaa cacccaccat tctccccaag ctctgaaagt gacagtggcc tctcgtgcct 1860 ccagcctggc catgtcccca gccactctgg aagcctttgt ggaaagagac agcacctatt 1920 ttcctcagcc agtgatcatt tatgcgaatg tgaggaaagg tctgcatccc attctcaatg 1980 ccaccgtggt ggcgacagtg gaaccagagg ctggagatcc cgttgtactg caacttttgg 2040 atggcggagc aggtgcagat gttataagaa atgatgggat ttactccagg tatttttcct 2100 cctttgctgt aagtggtagc tatagcctga cagtgcatgt ccgtcactct cccagcacaa 2160 gcacactagc cctccctgtc ccaggaaacc atgctatgta tgtaccaggt tacataacaa 2220 acgataatat tcaaatgaat gctcccaaaa acttgggcca cagacctgtg aaggagaggt 2280 ggggcttcag tcgagtgagc tcgggaggct ccttctccgt gctgggagtc ccagacggcc 2340 cccaccctga catgtttcca ccgtgcaaaa ttactgacct ggaagccatg aaagtggaag 2400 acgacgtcgt cctctcttgg acggcacctg gggaagactt cgatcagggg caaactacaa 2460 gctatgaaat aagaatgagc agaagcctat ggaacattcg ggatgacttt gacaatgcca 2520 tcttggtgaa ttcgtcagag ctagttcctc agcatgctgg caccagggag acatttacat 2580 tctcacccaa gcttgtcacc catgaacttg atcatgaact tgctgaagat gcacaagaac 2640 cctacatagt gtatgtggcc ctgagagcca tggatagaag ctccctcagg tcagctgtgt 2700 caaacattgc cctggtatca atgtctcttc ctccaaactc ttctcctgta gtgagcagag 2760 atgatctgat cctgaaagga gttttaacaa cagtaggttt gatagcaatc ctttgcctta 2820 ttatggttgt agcacactgt atttttaaca ggaaaaagag accatcaaga aaagagaatg 2880 agacaaaatt tctatgaaca agcaggcaca gtatcttcct tcttaggtag gatggacatg 2940 acctttacat ccacaaaata aaatgtgaac aaaatcaaaa tagtctcgac atggggactt 3000 ttacataatg c 3011 //