Dbfetch
ID AK046591; SV 1; linear; mRNA; HTC; MUS; 2220 BP. XX AC AK046591; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched DE library, clone:B430114K07 product:hypothetical Uncharacterised protein DE family Hly-III/UPF0073 containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2220 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; a99d78d7463d4a95165c4ca762d9d87b. DR Ensembl-Gn; ENSMUSG00000030168; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0031193; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0031162; mus_musculus_aj. DR Ensembl-Gn; MGP_BALBcJ_G0031173; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0030536; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0031631; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0030280; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0030856; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0031012; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0030964; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0031091; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0030998; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0031660; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0029995; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0030363; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000032272; mus_musculus. DR Ensembl-Tr; ENSMUST00000169744; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0079706; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0079769; mus_musculus_aj. DR Ensembl-Tr; MGP_BALBcJ_T0079713; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0077585; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0080186; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0079926; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0079293; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0079449; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0079332; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0079485; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0079340; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0080438; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0079356; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0078445; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=B430114K07 XX FH Key Location/Qualifiers FH FT source 1..2220 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="4 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="B430114K07" FT /tissue_type="adipose" FT /db_xref="taxon:10090" FT CDS 160..1011 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical Uncharacterised protein family FT Hly-III/UPF0073 containing protein (InterPro|IPR004254, FT evidence: InterPro)" FT /note="putative" FT /db_xref="GOA:Q8BQS5" FT /db_xref="InterPro:IPR004254" FT /db_xref="MGI:MGI:93830" FT /db_xref="UniProtKB/Swiss-Prot:Q8BQS5" FT /protein_id="BAC32799.1" FT /translation="MNEPAKHRLGCTRTPEPDIRLRKGHQLDDTRGSNNDNYQGDLEPS FT LETPVCSSYYENSPEEPECHDDNSQEDEGFMGMSPLLQAHHAMERMGEFVCKVWEGRWR FT VIPHDVLPDWLKDNDFLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLG FT IFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEGVSRLFSKLDYSG FT IALLIMGSFVPWLYYSFYCNPQPCFIYLIVICVLGIAAIIVSQWDMFATPQYRGVRAGE FT CM" XX SQ Sequence 2220 BP; 537 A; 486 C; 524 G; 673 T; 0 other; gacacaacac aagaatccgt ggagctcagc agtaccctca gactctggtc tacaactctg 60 acaggatttg gggtcaactt accatccctt aaaaatccat tctcccaaga agaagggaca 120 gaaagaaaga ccactttgta agaaaggctt tggtatccca tgaacgagcc agccaaacac 180 cgattggggt gcaccaggac tccagagcca gatatacggc tcagaaaagg gcaccaactt 240 gatgatacaa ggggaagtaa taatgacaac taccaaggag atttggagcc cagcttagag 300 acacctgttt gttcttccta ttatgaaaat agcccggagg agcccgagtg tcatgatgac 360 aattcccagg aagatgaagg gtttatgggc atgtccccgc tcctacaggc ccatcatgct 420 atggaacgaa tgggagagtt tgtttgtaag gtgtgggaag gccgatggcg agtgatccct 480 cacgatgtgc taccggattg gcttaaggat aatgacttcc ttctccatgg acaccggcct 540 cctatgcctt cctttcgggc ctgttttaag agcattttta gaatacacac agagacgggc 600 aacatttgga cacatctcct aggttgtgta ttcttcctgt gcctggggat cttttatatg 660 tttcgcccaa atatatcttt tgtggcccct ctgcaagaga aagtggtctt tggcttgttc 720 ttcttgggag ccattctctg cctttccttt tcatggctct tccacacggt gtactgccac 780 tcagaagggg tctcccgact cttctctaaa ttggattact ctggtattgc tcttctgatc 840 atgggaagtt ttgttccttg gctttattat tctttctact gtaacccaca accttgcttc 900 atctacctga ttgtcatctg tgtgctgggc attgcagcca ttatcgtctc tcagtgggac 960 atgtttgcca cccctcagta tcggggggtc agagcaggtg agtgcatgtg agtgtgcagt 1020 tatcaccggt cattcaaggt gcaccattag aatcagaggc tgtgcttttc agtgcagaga 1080 cacagtaact gtcctgcttg tccttaggct tctgacctgg tgctcagtta ggaggaagca 1140 cagggttgaa gggcagcgat aagatgggtg cgcacctata ttttgagcag tgttgtttat 1200 ttgaggaaat atcacaatat aatgacttct gtattctttc agattagtgt acttgtgact 1260 gattcttctt gtgttatact tagtatttta tattttaatt taaattgctt tgataaataa 1320 ggccagagtt catgctgatt atgctccaaa aacctttgat atttaggtag tgcctactgg 1380 gtgccctgtg acgttggcag ccttcttgtt caattgtggc atttgcacaa ccagaagttt 1440 gaaaaatact gcctataatt ttgaaagcag tagccttctg ctgagcgata ctgacaaatc 1500 ctaatgaact gtgtctgaag ttgtgtcttc tgctttctgt ccctaaaata acacgcagta 1560 cctcccaagt ggtattacaa cacatgtttc ttcttgctat aaaattcaag ccctggttca 1620 tctgtatgca cttcgaatgc tagaagagaa ctgacctctt gttcctgacc tcccagcgtt 1680 ctcgctcgcc tcccttttca gatgtcacag gagcagatgg gcaacagtca accctggctt 1740 ttcagttcct cactagggca gtggtgttaa ccgagttgga gtacatgggc taagaacatg 1800 tttgctgagt ggagctgagc attaaacact aggctaagtc tcagcctctg actggagagt 1860 gaaaagcact tttagcaagg aaaagaacag tgtagccatg cttggaggac agaagggggg 1920 tggaatcgtt tttatttggg tctgcttggt ccccgacttt gatgtagtta gcaagccatt 1980 tcttcctctc atttaagtgc atgcgtttct gagtgtgagt ccatatgcat ccatgtatat 2040 atgctgtggc atgctgtcag cttactggca attctggagg tcctggagtc tgtgaagaga 2100 gcttaccaaa tggcagcctc ttgttgtatt ctgcctgtaa aaggtagcat tgaagggagt 2160 ttaaacaagt cccccatgct ttttcttttc taaagctctt ggcagtgtgg tttttttttt 2220 //