Dbfetch
ID AK033761; SV 1; linear; mRNA; HTC; MUS; 2499 BP. XX AC AK033761; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus adult male epididymis cDNA, RIKEN full-length enriched DE library, clone:9230105E02 product:G PROTEIN-COUPLED RECEPTOR homolog [Homo DE sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2499 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 2ba20995641955ceb5ebe6cb20cebd9d. DR Ensembl-Gn; ENSMUSG00000047678; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0035575; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0035553; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0035485; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0035546; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0035262; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0036075; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0034554; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0035231; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0035384; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0035331; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0035466; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0035374; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0036087; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0034255; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0034690; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000053659; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0095708; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0095795; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0095748; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0095712; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0095285; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0096233; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0095889; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0095203; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0095406; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0095252; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0095427; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0095231; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0096564; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0095303; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0094271; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=9230105E02 XX FH Key Location/Qualifiers FH FT source 1..2499 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="9230105E02" FT /tissue_type="epididymis" FT /db_xref="taxon:10090" FT CDS 281..1267 FT /codon_start=1 FT /transl_table=1 FT /note="G PROTEIN-COUPLED RECEPTOR homolog [Homo sapiens] FT (SPTR|Q96P67, evidence: FASTY, 81.6%ID, 100%length, FT match=1012)" FT /note="putative" FT /db_xref="GOA:Q8BZR0" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:2441734" FT /db_xref="UniProtKB/Swiss-Prot:Q8BZR0" FT /protein_id="BAC28466.1" FT /translation="MTNNSTCIQPSVISTTALPVTYIFLFIIGLFGNSLAQWVFLTKIG FT KKTSTHIYLANLVTANLLVCTAMPFMGIYFLRGFYWKYQSVQCRLVNFLGTLSMHVSMF FT VSLLILSWIAISRYATLMKKESKQEATSCYERMFYGHVLKRFRQPNFARTMCIYIWGVV FT LVIIIPVTLYYSVVEATEEGQSQCYNRQMELGARPSQIAGLIGTTFIGFSFLVVVTSYY FT SLVSHLRRVRTCTSITEKDLTYRSVKRHLLIIQVLLVVCFLPYSIFKPIFYVLHQREGD FT CQQLNYLIEAKNILTCLASARSSTDPIIFLLLDKTFKKTLYGLLTKS" FT regulatory 2471..2476 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 2499 FT /note="putative" XX SQ Sequence 2499 BP; 805 A; 447 C; 430 G; 817 T; 0 other; gggctgatgg ttgccctctc cagcttctca ggatcaatct ttgagtaagc ccaacttctc 60 atcatctacg tactagacga gtgactctac tcatactgat taaggatact ggaagagtga 120 agatcagaga actgtgagtg tgaaacagtc aatgagcata agctactcag acagacgaag 180 gacttatcca tcgctttaag tactgttgct tttactttaa gcagaccact gtgacaacga 240 gaaaagctcc tgtgacaaaa atcaagaaaa tctaatataa atgactaata actcgacatg 300 cattcaacca tccgtgattt ctaccacagc tttaccggtc acttacatct ttttgtttat 360 tattggtctc tttggaaact cacttgctca gtgggtattt ttaacaaaaa taggtaagaa 420 aacatcaaca catatctact tggcaaatct tgtgactgca aacttacttg tgtgcactgc 480 tatgcctttc atgggtatat atttcttgag aggtttttat tggaaatatc aatctgtaca 540 atgcagactg gtcaattttt tgggaactct ttctatgcat gtaagtatgt ttgtcagcct 600 cttaatttta agctggattg ccataagccg ctatgctacc ttaatgaaaa aggagtccaa 660 gcaagaggcc acctcatgct acgagagaat gttttatggt cacgtactga aaagatttcg 720 ccagcccaac tttgccagaa caatgtgtat ttacatatgg ggagttgtgc ttgtcataat 780 tattccagtt accctatact actcagtagt cgaggctaca gaagaaggac agagccagtg 840 ctacaatcgg cagatggaac tgggagccag accttctcag attgcgggtc tcattggaac 900 cacatttatt ggattctcct ttttagtagt agtgacatca tactattctc ttgtcagcca 960 tctgcgaaga gtaaggacct gtacctccat taccgagaaa gatttgacct acagatctgt 1020 gaaaagacac cttttgatca tccaggtcct cctagtagtt tgctttcttc catatagtat 1080 ttttaaaccc attttttatg ttctgcacca gagagaagga gactgtcagc agctgaatta 1140 tttaatagaa gcaaaaaaca tcctcacttg tcttgcatca gccagaagta gtacagaccc 1200 cattatattt cttttattag ataaaacatt caagaagaca ctatatggtc tccttacaaa 1260 atcttaattc actgcacatt ctaacatatg gttgactttt ggatagaaaa caccacaaaa 1320 taggaaaaaa aatgcatgtg actcttagtg acattaacgg gcaccaagaa aacctctatg 1380 gtttttttaa aaaaagatat atgcataaaa ttggacttac agttctactt atattgaaag 1440 accagatggc agagactttc agagacaagt caagcatacc aaagggattc tactgtgtgt 1500 gaagtcagac tttttgtttt gttttgtttt gttttcagtc agttgtggat attctgttca 1560 aaacacaata ttttatgact ataggatgaa gaaccaaaaa ggcttatggg tttgcctgct 1620 ttctaaccta atgcaagtac ccatctatgg tcagatttta tattgttggt aactttaaaa 1680 aataatttta aaatgtaagt actggaaaag tcgagcagta agaaatgttt ttatttaaat 1740 cccatctaac tgcatgaata atgcagtgtg aagtcaattt ggtattattt ggctcatttt 1800 actgggaaag gcaatattca atgattctaa tatttaatac atagatttta cttacacaca 1860 tttggattac acttgtcaaa ataaaaaaat ataaaattat atgtccatct atatgctatt 1920 ttatatattt ccaatataaa taatggtgct atcaatgata gtacctgcca tctatttaat 1980 taatttttgt aaactaaaca aatgaagtat aaagaattgt aaccatgttg gataaaaggc 2040 tggcctctgg attcaaactg tctgggtatt atactgtctc catctcttat ttagatggag 2100 aattttgggc aaactactta ctctctttac ataatagttt ctttaatcgt ggaacagaaa 2160 atatgacctg attcatatca ctattattaa atcagatact gttcctactg tgagctacca 2220 gcacttgcta tgtgctaggc cctctgtgta tatgtttcat gattataatt ttaatcatca 2280 caaccacaaa gcatgttaat gtacttactg atgaaaaaac ccagatatga agtgaagtgg 2340 ttatcccaat tcctccagta tttaagtata tttaagaagc aatcatttct tagtgataat 2400 ttctttcatg taatcttgcc agtaacgaaa agagtgatta tattctgtat tgtatacatt 2460 atgattaaaa aataaaaaaa gtgttcttca aatgatcat 2499 //