Dbfetch
ID AK033713; SV 1; linear; mRNA; HTC; MUS; 2073 BP. XX AC AK033713; XX DT 18-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 15) XX DE Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, DE clone:9130230B07 product:5-HYDROXYTRYPTAMINE 2B RECEPTOR, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2073 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 2f1b99d9448997aec0cb38e7a03560fb. DR Ensembl-Gn; ENSMUSG00000026228; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0016242; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0016223; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0016184; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0016180; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0016008; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0016636; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0015593; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0015984; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0016087; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0016086; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0016158; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0016112; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0016679; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015380; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0015657; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000027431; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0021034; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0021005; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0020970; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0020956; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0020771; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0021474; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0020301; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0020735; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0020853; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0020865; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0020938; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0020838; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0021522; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0020050; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0020374; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=9130230B07 XX FH Key Location/Qualifiers FH FT source 1..2073 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="9130230B07" FT /tissue_type="cecum" FT /db_xref="taxon:10090" FT CDS 328..1767 FT /codon_start=1 FT /transl_table=1 FT /note="5-HYDROXYTRYPTAMINE 2B RECEPTOR (SPTR|Q9QWS2, FT evidence: FASTY, 99.8%ID, 100%length, match=1437)" FT /note="putative" FT /db_xref="GOA:Q02152" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR000482" FT /db_xref="InterPro:IPR002231" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:109323" FT /db_xref="UniProtKB/Swiss-Prot:Q02152" FT /protein_id="BAC28441.1" FT /translation="MASSYKMSEQSTTSEHILQKTCDHLILTNRSGLETDSVAEEMKQT FT VEGQGHTVHWAALLILAVIIPTIGGNILVILAVALEKRLQYATNYFLMSLAIADLLVGL FT FVMPIALLTIMFEAIWPLPLALCPAWLFLDVLFSTASIMHLCAISLDRYIAIKKPIQAN FT QCNSRATAFIKITVVWLISIGIAIPVPIKGIETDVINPHNVTCELTKDRFGSFMVFGSL FT AAFFAPLTIMVVTYFLTIHTLQKKAYLVKNKPPQRLTRWTVPTVFLREDSSFSSPEKVA FT MLDGSHRDKILPNSSDETLMRRMSSVGKRSAQTISNEQRASKALGVVFFLFLLMWCPFF FT ITNLTLALCDSCNQTTLKTLLEIFVWIGYVSSGVNPLIYTLFNKTFREAFGRYITCNYR FT ATKSVKALRKFSSTLCFGNSMVENSKFFTKHGIRNGINPAMYQSPMRLRSSTIQSSSII FT LLDTLLTENDGDKAEEQVSYI" XX SQ Sequence 2073 BP; 593 A; 481 C; 450 G; 549 T; 0 other; gagagcaagt cagtggggga ggatctgcca ggagagggag tccaactgaa cagacacagg 60 acggctggct taggaagcca cagaagacaa gcgtcttctg gaatctaagc ctctagaaaa 120 tctaaaatgt ggatgtctta cctgcaaaca cggacagacg tgtacacagt cccatcttcg 180 agagcctgaa tctttttaga aggaagaagt caccttggct gtgagtgtct ggtaggtttg 240 ctaaatgctt tgctaaagca gatgacttgc ttagctactg accatgctga ccactgtctg 300 gaactggact gagtcaccaa aaggcgaatg gcttcatctt ataaaatgtc tgaacaaagc 360 acaacttctg agcacatttt acagaagaca tgtgatcacc tgatcctgac taaccgttct 420 ggattagaga cagactcagt agcagaggaa atgaagcaga ctgtggaggg acaggggcat 480 acagtgcact gggcagctct cctgatactc gcggtgataa tacccaccat tggtgggaac 540 atccttgtga ttctggctgt tgcactggag aaaaggctgc agtacgctac caactacttt 600 ttaatgtcct tggcgatagc agatttgctg gttggattgt ttgtgatgcc gattgccctc 660 ttgacaatca tgtttgaggc tatatggccc ctcccactgg ccctgtgtcc tgcctggtta 720 ttcctcgatg ttctcttttc aactgcctcc atcatgcatc tctgtgccat ttccctggac 780 cgctatatag ccatcaaaaa gccaattcag gccaatcagt gcaactcccg ggctactgca 840 ttcatcaaga ttacagtggt atggttaatt tcaataggca tcgccatccc agtccctatt 900 aaaggaatcg agactgatgt gattaatcca cacaatgtca cctgtgagct gacaaaggac 960 cgctttggca gttttatggt ctttgggtca ctggctgctt tcttcgcacc tctcaccatc 1020 atggtagtca cttactttct caccattcac actttacaga agaaagctta cttggtcaaa 1080 aataagccac ctcaacgcct aacacggtgg actgtgccca cagttttcct aagggaagac 1140 tcatcctttt catcaccaga aaaggtggca atgctggatg ggtctcacag ggataaaatt 1200 ctacctaact caagtgatga gacacttatg cgaagaatgt cctcagttgg aaaaagatca 1260 gcccaaacca tttctaatga gcagagagcc tcgaaggccc ttggagtcgt gtttttcctt 1320 tttctgctta tgtggtgccc cttttttatt acaaatctaa ctttagctct gtgtgattcc 1380 tgcaatcaga ccactctcaa aacactcctg gagatatttg tgtggatagg ctacgtttcc 1440 tcgggggtga atcctctgat ctatacactc ttcaataaga catttcggga agcatttggc 1500 aggtacatca cctgcaatta ccgagccaca aagtcagtaa aagcacttag gaagttttcc 1560 agtacacttt gttttgggaa ttcaatggta gaaaactcta aatttttcac aaaacatgga 1620 attcgaaatg ggatcaaccc tgccatgtac cagagcccaa tgaggctccg aagttcaacc 1680 attcagtcct catcaatcat cctcctcgat acccttctca ctgaaaacga tggcgacaaa 1740 gcggaagagc aggtcagcta catatagcag aacgggccgc cctcatctga gagaggtgat 1800 gagcaggacg cacgcgcaac atggaaaggt acagagtgaa tgaaaacccc accctctcct 1860 gagtgaagta ccaaggctgt ccagcttcct tatctaaaca aactcaagca tggctaaagt 1920 agatctgatg gcttcaaaca aacgcaatct ctactctggt tttcaaatac aattaaataa 1980 gttgataaat ttcagtcttt taaaaaaaaa gaatgtcaac aaatttttaa gtttctaatg 2040 tgtgtaaagt tgtgttaaga aagaaataaa atg 2073 //