Dbfetch
ID AK004772; SV 1; linear; mRNA; HTC; MUS; 2808 BP. XX AC AK004772; XX DT 08-FEB-2001 (Rel. 66, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 22) XX DE Mus musculus adult male lung cDNA, RIKEN full-length enriched library, DE clone:1200014O08 product:phosphodiesterase 1B, Ca2+-calmodulin dependent, DE 63 kDa, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2808 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; ecdf24e2f3192c37f10aa073c52857ee. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=1200014O08 XX FH Key Location/Qualifiers FH FT source 1..2808 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1200014O08" FT /tissue_type="lung" FT /db_xref="taxon:10090" FT CDS 63..1550 FT /codon_start=1 FT /transl_table=1 FT /note="phosphodiesterase 1B, Ca2+-calmodulin dependent, 63 FT kDa (MGD|MGI:97523)" FT /note="putative" FT /db_xref="GOA:Q9DBS6" FT /db_xref="InterPro:IPR002073" FT /db_xref="InterPro:IPR003607" FT /db_xref="InterPro:IPR013706" FT /db_xref="InterPro:IPR023088" FT /db_xref="InterPro:IPR023174" FT /db_xref="InterPro:IPR036971" FT /db_xref="MGI:MGI:97523" FT /db_xref="UniProtKB/TrEMBL:Q9DBS6" FT /protein_id="BAB23551.1" FT /translation="MVKQLENGEVNIEELKKNLEYTASLLEAVYIDETRQILDTEDELR FT ELRSDAVPSEVRDWLASTFTQQTRAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTS FT VGPTYSTAVHNCLKNLDLWCFDVFSLNRAADDHALRTIVFELLTRHSLISRFKIPTVFL FT MSFLEALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEVLAIIFAAAIH FT DYEHTGTTNSFHIQTKSECAILYNDRSVLENHHISSVFRMMQDDEMNIFINLTKDEFAE FT LRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVH FT SRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVA FT EKSVQPLADDDSKPKSQPSFQWRQPSLDVDVGDPNPDVVSFRATWTKYIQENKQKWKER FT AASGITNQMSIDELSPCEEEAPSSPAEDEHNQNGNLD" FT regulatory 2789..2794 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 2808 FT /note="putative" XX SQ Sequence 2808 BP; 638 A; 785 C; 735 G; 650 T; 0 other; gggcaaaccc tgttcctgtc cagaggagcc acctccaggg ccccatcctc aggctgcgct 60 acatggtgaa gcagttggag aatggggagg ttaacatcga ggagctgaag aaaaacctgg 120 aatacacagc ttccctgctg gaagctgtct acattgatga gacaaggcaa atcctagaca 180 ctgaagatga gcttcgggaa cttcggtcag atgctgtgcc ttcagaggtg cgggactggt 240 tggcctccac cttcacccag cagacccgag ccaaaggtcg cagggcagaa gagaaaccca 300 agttccgaag catcgtgcat gctgtgcagg ctgggatctt cgtggagcgg atgttccgga 360 gaacgtatac ctctgtgggc cccacatact ctactgcagt ccacaactgt ctcaagaacc 420 tggacctctg gtgctttgat gtcttttcct tgaaccgggc agccgatgac cacgctctga 480 ggaccattgt ttttgagttg ctgactcggc atagcctcat cagccgcttt aagattccca 540 cagtgtttct gatgagtttt ctggaggcct tggagacagg ctatgggaaa tataagaatc 600 cttaccacaa ccagatccac gcagccgacg tgacccagac tgtccattgc ttccttctcc 660 gcacaggcat ggtgcactgc ctgtcagaga ttgaggtctt ggccatcatc tttgctgcag 720 ccatccatga ctatgagcac acaggcacaa ccaacagctt ccacattcag accaagtcag 780 aatgtgccat cctgtacaat gatcgatcgg tgctggagaa tcaccacatc agctctgtct 840 ttcgaatgat gcaggatgat gagatgaaca tttttatcaa tctcaccaag gatgaatttg 900 cagagctgcg ggccctggtt atcgagatgg tgttggccac agacatgtcc tgccatttcc 960 agcaagtgaa gactatgaag acagcactgc agcagttgga aaggattgac aagtccaagg 1020 ccctatctct tctgcttcat gctgctgaca tcagccaccc aactaagcag tggtcagtcc 1080 acagccgctg gaccaaggcc ctaatggaag agttcttccg ccagggtgac aaggaggcag 1140 agctgggcct gcccttctct ccactctgtg atcgcacttc cacattggtg gcccagtccc 1200 agataggttt cattgacttc attgtggagc caaccttctc tgtgctgact gatgtggcag 1260 aaaagagtgt ccagcccttg gcagatgatg attccaagcc taaaagtcag cccagcttcc 1320 agtggcgcca gccttcttta gatgtggacg taggagaccc caaccctgat gtggtcagtt 1380 tccgtgccac ctggaccaag tacattcaag agaacaaaca gaagtggaag gaacgggcag 1440 caagtggcat caccaaccag atgtccattg atgaactgtc cccctgtgag gaagaagccc 1500 catcctcccc tgcagaagat gagcacaacc agaatgggaa tctggattag ggaactgggg 1560 gctgaccagg tcctcactga gtccaaagtc ttcgatgtca ttagcactat ccatcaggac 1620 tggttccccc atctgctcca agggagtgtg ttggttgtgg gaaagacagc tcacctaaga 1680 gccaaatgtt ggagcgggtg gggtgtggga agggcccctc cccacccaca ggccctcagt 1740 ggtcactgtg cccatccctt gcctctggac tcctcctttg gccacttggg aggagtaagc 1800 tccctgcagg cttcctacag tttggagggg agggtcagag atgccagccc cctgggccct 1860 ccccatcctt cttgcctcca agtttctaag caatacattt tgggggttcc ctcagtcccc 1920 caccccagat cttagctggc aggtctgggt ttcccttctc ttccctgaga aagggccaga 1980 ataggatagg aagctggcag ttttcaaagc cctgcatggg aagggcaggt gtcccttcag 2040 gttccttcct aagatgaggt gggggacatc ctcttgatcc catacttgca cttcttcagc 2100 cccattccct tgcaaattct ctctctcctg tgcccagaca gtggctggga gaggagagga 2160 gccattggga ttctgtctga gggaagtctt tcctggagtc ctcaaatact tggggatggt 2220 ctgggcttga ggggcttgta ccctgatcta gatgggtttt tgaccctttg cctccttcct 2280 gtccccggga actaggaagc cctcatccga ccaatgtctg taaacgctct gaggtcttcc 2340 ttcaggatgt atcttatgag caaaggaagg agagagcagc tagccccagt acaagcaggg 2400 ggaagtatta cccagtaatg ttgacacaga gcaggtcctt cctgcctccc ttctccccga 2460 actggcccac taagagattt ccccctcccg gggcccctgg tgggtggaag gcagatgggg 2520 aggggctcag ggcggtagca acttggagca cccagagcga gtgcagccag gtaaagcctc 2580 ttcctgtcct caggctcctt gccccacgtc accccattta aggccaagtc caggtgactg 2640 cctcctcctc tcttgtaaat acatgcattt gtacagtggg ccctgttctt gtgaagtcca 2700 tctccatggt cattagacct gccactctga accgcatgtg actcccccat gctcttggtc 2760 tcccaggccc ctgctatagc cagagatcaa taaagaaggg agaccggc 2808 //