Dbfetch
ID AF175265; SV 1; linear; mRNA; STD; HUM; 2726 BP. XX AC AF175265; XX DT 02-AUG-2000 (Rel. 64, Created) DT 07-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Homo sapiens vacuolar sorting protein 35 (VPS35) mRNA, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2726 RX PUBMED; 11102511. RA Renfrew Haft C., Sierra M.L., Bafford R., Lesniak M.A., Barr V.A., RA Taylor S.I.; RT "Human orthologs of yeast vacuolar protein sorting proteins Vps26, 29, and RT 35: assembly into multimeric complexes"; RL Mol. Biol. Cell 11(12):4105-4116(2000). XX RN [2] RP 1-2726 RA Renfrew Haft C., Sierra L., Taylor S.I.; RT ; RL Submitted (04-AUG-1999) to the INSDC. RL Diabetes Branch, National Institutes of Health, 10 Center Dr., MSC-1770, RL Bethesda, MD 20892, USA XX DR MD5; 0e0ad684ed02373b2e3da50a45975668. DR Ensembl-Gn; ENSG00000069329; homo_sapiens. DR Ensembl-Tr; ENST00000299138; homo_sapiens. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Homo sapiens" FT /mol_type="mRNA" FT /cell_line="HCC" FT /cell_type="carcinoma" FT /tissue_type="colon" FT /db_xref="taxon:9606" FT CDS 58..2448 FT /codon_start=1 FT /gene="VPS35" FT /product="vacuolar sorting protein 35" FT /note="retromer protein; similar to MEM3" FT /db_xref="GOA:Q96QK1" FT /db_xref="H-InvDB:HIT000072619.12" FT /db_xref="HGNC:HGNC:13487" FT /db_xref="InterPro:IPR005378" FT /db_xref="InterPro:IPR016024" FT /db_xref="InterPro:IPR042491" FT /db_xref="PDB:2R17" FT /db_xref="PDB:5F0J" FT /db_xref="PDB:5F0K" FT /db_xref="PDB:5F0L" FT /db_xref="PDB:5F0M" FT /db_xref="PDB:5F0P" FT /db_xref="PDB:5OSH" FT /db_xref="PDB:5OSI" FT /db_xref="UniProtKB/Swiss-Prot:Q96QK1" FT /protein_id="AAF89953.1" FT /translation="MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKH FT ASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNI FT IPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPD FT EGEPPDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGT FT NLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNP FT FLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQ FT DMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELT FT RLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVD FT SIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHF FT GAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAEL FT AELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTF FT ERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGK FT RVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIRED FT LPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL" XX SQ Sequence 2726 BP; 823 A; 545 C; 599 G; 759 T; 0 other; aggaattcgg cacgaggcgg ggcgggtgct gcttgctgca ggctctgggg agtcgccatg 60 cctacaacac agcagtcccc tcaggatgag caggaaaagc tcttggatga agccatacag 120 gctgtgaagg tccagtcatt ccaaatgaag agatgcctgg acaaaaacaa gcttatggat 180 gctctaaaac atgcttctaa tatgcttggt gaactccgga cttctatgtt atcaccaaag 240 agttactatg aactttatat ggccatttct gatgaactgc actacttgga ggtctacctg 300 acagatgagt ttgctaaagg aaggaaagtg gcagatctct acgaacttgt acagtatgct 360 ggaaacatta tcccaaggct ttaccttttg atcacagttg gagttgtata tgtcaagtca 420 tttcctcagt ccaggaagga tattttgaaa gatttggtag aaatgtgccg tggtgtgcaa 480 catcccttga ggggtctgtt tcttcgaaat taccttcttc agtgtaccag aaatatctta 540 cctgatgaag gagagccacc agatgaagaa acaactggtg acatcagtga ttccatggat 600 tttgtactgc tcaactttgc agaaatgaac aagctctggg tgcgaatgca gcatcaggga 660 catagccgag atagagaaaa aagagaacga gaaagacaag aactgagaat tttagtggga 720 acaaatttgg tgcgcctcag tcagttggaa ggtgtaaatg tggaacgtta caaacagatt 780 gttttgactg gcatattgga gcaagttgta aactgtaggg atgctttggc tcaagaatat 840 ctcatggagt gtattattca ggttttccct gatgaatttc acctccagac tttgaatcct 900 tttcttcggg cctgtgctga gttacaccag aatgtaaatg tgaagaacat aatcattgct 960 ttaattgata gattagcttt atttgctcac cgtgaagatg gacctggaat cccagcggat 1020 attaaacttt ttgatatatt ttcacagcag gtggctacag tgatacagtc tagacaagac 1080 atgccttcag aggatgttgt atctttacaa gtctctctga ttaatcttgc catgaaatgt 1140 taccctgatc gtgtggacta tgttgataaa gttctagaaa caacagtgga gatattcaat 1200 aagctcaacc ttgaacatat tgctaccagt agtgcagttt caaaggaact caccagactt 1260 ttgaaaatac cagttgacac ttacaacaat attttaacag tcttgaaatt aaaacatttt 1320 cacccactct ttgagtactt tgactacgag tccagaaaga gcatgagttg ttatgtgctt 1380 agtaatgttc tggattataa cacagaaatt gtctctcaag accaggtgga ttccataatg 1440 aatttggtat ccacgttgat tcaagatcag ccagatcaac ctgtagaaga ccctgatcca 1500 gaagattttg ctgatgagca gagccttgtg ggccgcttca ttcatctgct gcgctctgag 1560 gaccctgacc agcagtactt gattttgaac acagcacgaa aacattttgg agctggtgga 1620 aatcagcgga ttcgcttcac actgccacct ttggtatttg cagcttacca gctggctttt 1680 cgatataaag agaattctaa agtggatgac aaatgggaaa agaaatgcca gaagattttt 1740 tcatttgccc accagactat cagtgctttg atcaaagcag agctggcaga attgccctta 1800 agactttttc ttcaaggagc actagctgct ggggaaattg gttttgaaaa tcatgagaca 1860 gtcgcatatg aattcatgtc ccaggcattt tctctgtatg aagatgaaat cagcgattcc 1920 aaagcacagc tagctgccat caccttgatc attggcactt ttgaaaggat gaagtgcttc 1980 agtgaagaga atcatgaacc tctgaggact cagtgtgccc ttgctgcatc caaacttcta 2040 aagaaacctg atcagggccg agctgtgagc acctgtgcac atctcttctg gtctggcaga 2100 aacacggaca aaaatgggga ggagcttcac ggaggcaaga gggtaatgga gtgcctaaaa 2160 aaagctctaa aaatagcaaa tcagtgcatg gacccctctc tacaagtgca gctttttata 2220 gaaattctga acagatatat ctatttttat gaaaaggaaa atgatgcggt aacaattcag 2280 gttttaaacc agcttatcca aaagattcga gaagacctcc cgaatcttga atccagtgaa 2340 gaaacagagc agattaacaa acattttcat aacacactgg agcatttgcg cttgcggcgg 2400 gaatcaccag aatccgaggg gccaatttat gaaggtctca tcctttaaaa aggaaatagc 2460 tcaccatact cctttccatg tacatccagt gagggtttta ttacgctagg tttcccttcc 2520 atagattgtg cctttcagaa atgctgaggt aggtttccca tttcttacct gtgatgtgtt 2580 ttacccagca cctccggaca ctcaccttca ggaccttaat aaaattattc acttggtaag 2640 tgttcaagtc tttctgatca ccccaagtag catgactgat ctgcaattta aaattcctgt 2700 gatctgtaaa aaaaaaaaaa aaaaaa 2726 //