Dbfetch
ID AB062109; SV 3; linear; genomic DNA; STD; MUS; 8003 BP. XX AC AB062109; AB062107-AB062108; XX DT 23-NOV-2001 (Rel. 69, Created) DT 02-APR-2009 (Rel. 100, Last updated, Version 8) XX DE Mus musculus C6st gene for chondroitin 6-sulfotransferase, complete cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-8003 RA Uchimura K., Muramatsu T.; RT ; RL Submitted (22-MAY-2001) to the INSDC. RL Contact:Kenji Uchimura Nagoya University School of Medicine, Department of RL Biochemistry; 65 Tsurumai-cho, Showa-ku, Nagoya, Aichi 466-8550, Japan XX RN [2] RX DOI; 10.1074/jbc.M104719200. RX PUBMED; 11696535. RA Uchimura K., Kadomatsu K., Nishimura H., Muramatsu H., Nakamura E., RA Kurosawa N., Habuchi O., El-Fasakhany F.M., Yoshikai Y., Muramatsu T.; RT "Functional analysis of the chondroitin 6-sulfotransferase gene in relation RT to lymphocyte subpopulations, brain development, and oversulfated RT chondroitin sulfates"; RL J Biol Chem 277(2):1443-1450(2002). XX DR MD5; 6725540baf76e954c18f69baca951f30. DR Ensembl-Gn; ENSMUSG00000057337; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0017266; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0017244; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0017204; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0017204; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0017027; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0017662; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0016598; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0016999; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0017104; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0017098; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0017179; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0017126; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0017700; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0016381; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0016662; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000068690; mus_musculus. DR Ensembl-Tr; ENSMUST00000167915; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0025317; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0025293; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0025250; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0025256; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0025066; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0025756; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0024616; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0025001; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0025117; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0025110; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0025233; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0025111; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0025800; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0024329; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0024605; mus_musculus_wsbeij. XX FH Key Location/Qualifiers FH FT source 1..8003 FT /organism="Mus musculus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10090" FT mRNA join(1..135,236..388,4416..4643,5832..7110) FT /gene="C6st" FT /product="chondroitin 6-sulfotransferase" FT /note="alternative splicing" FT mRNA join(1..135,4416..4643,5832..7110) FT /gene="C6st" FT /product="chondroitin 6-sulfotransferase" FT /note="alternative splicing" FT exon 1..135 FT /gene="C6st" FT /number=1a FT /experiment="experimental evidence, no additional details FT recorded" FT gap 136..235 FT /estimated_length=unknown FT mRNA join(236..388,4416..4643,5832..7110) FT /gene="C6st" FT /product="chondroitin 6-sulfotransferase" FT /note="alternative splicing" FT exon 236..388 FT /gene="C6st" FT /number=1b FT gap 389..488 FT /estimated_length=unknown FT mRNA join(4182..4643,5832..7110) FT /gene="C6st" FT /product="chondroitin 6-sulfotransferase" FT /note="alternative splicing" FT exon 4182..4415 FT /gene="C6st" FT /number=1c FT /experiment="experimental evidence, no additional details FT recorded" FT exon 4416..4643 FT /gene="C6st" FT /number=2 FT /experiment="experimental evidence, no additional details FT recorded" FT CDS join(4504..4643,5832..7110) FT /codon_start=1 FT /transl_table=1 FT /gene="C6st" FT /product="chondroitin 6-sulfotransferase" FT /db_xref="GOA:O88199" FT /db_xref="InterPro:IPR000863" FT /db_xref="InterPro:IPR016469" FT /db_xref="InterPro:IPR027417" FT /db_xref="MGI:MGI:1858224" FT /db_xref="UniProtKB/Swiss-Prot:O88199" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAB72166.1" FT /translation="MEKGLALPQDFRDLVHSLKIRGRYVLFLAFVVIVFIFIEKENKII FT SRVSDKLKQIPHFVADANSTDPALLLSENASLLSLSELDSTFSHLRSRLHNLSLQLGVE FT PAMESQEAGAEKPSQQAGAGTRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIE FT RTVFFQQRGASAAGSALVYRDVLKQLLLCDLYVLEPFISPPPEDHLTQFLFRRGSSRSL FT CEDPVCTPFVKKVFEKYHCRNRRCGPLNVTLAGEACRRKDHVALKAVRIRQLEFLQPLV FT EDPRLDLRVIQLVRDPRAVLASRIVAFAGKYENWKKWLSEGQDQLSEDEVQRLRGNCES FT IRLSAELGLRQPAWLRGRYMLVRYEDVARRPLQKAREMYSFAGIPLTPQVEDWIQKNTQ FT ATRDSSDVYSTQKNSSEQFEKWRFSMPFKLAQVVQAACGPTMHLFGYKLARDAASLTNR FT SISLLEERGTFWVT" FT exon 5832..8003 FT /gene="C6st" FT /number=3 FT /experiment="experimental evidence, no additional details FT recorded" XX SQ Sequence 8003 BP; 1780 A; 2018 C; 2077 G; 1928 T; 200 other; agagtgggcg ccgtggggag cgcagcccca gcattttctg agccgagagc gcagttgggg 60 gcggatgctg ccggggctgg acgccgacct ccggagtgtc ggatccgccc gccgggagga 120 ggaggctcga ccgggnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 180 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnggatt 240 caggaacccc ggctccctgc ttcctactgg gtgacacaga gggatcagcc ctctggcctc 300 acaactttcc cacagcagcc agatcttccc tctgcctgtg gagccccgtg gagccgcgtt 360 ttttctactt ggaaagctgt atatacagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 420 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480 nnnnnnnnga gctctggtat gctaagtcag cacaggagga atagggattt ttttggcttc 540 tctgggctct attgaaagaa gaagaatggt cttgggcaca tgttaaatag aacgaactcc 600 agtgctgaga ccagaaagga tgcgcccccg ggtggggaat agtgggaagg gctggggtca 660 gatggtgccc ataaaggctg ggaatgaggt gtggctccca tccccagggc cttggagggc 720 ttgtgttctg ctctgagttg tgcacgaagg gttttcagca gctagagtca cccggagtac 780 tgggctgggt gtctaagacg ctctcgacat caggaccgcg ttcgcgtatc tgagttaagg 840 tgctcgtagg cgcccccgtg tgttggagac ggggagagtt tgggagagga atgtggacgg 900 aatgcgaacc agaagactca gctgtgctga tggaccagaa gagaggagtg agatgcgtga 960 aaaggaggcc accatcgcct aagaagagtg agggaagagc gcacccccag ggaatcccag 1020 aggaagcttt agtagagaac ggccagagcg caggagagga agagggaggg gcacaccatg 1080 cagtccccag gttgaaatgt agcaagggcc accctctcac agaaggtgac tgaggactcc 1140 cccagggtgt ttttaaggga aaaaaggata ttgcagaacg agaggactga gacacaaagg 1200 ccagagagaa atatgaggca ggaggatgat cctcttgaga actgtgcggc tgattactat 1260 gagtggctta tgagaatgtt tcccagctta tacccactgc cacctcccag acggcaaggc 1320 tggatgctgc tccctcttgt ggctcccaac atcgctaggc cagacgcaca gtggccctca 1380 ccaaatagaa gtgtccatgg agaacctcag cccggccgac atcttctttt actgctcctg 1440 gtgtttgtac ccagcaggct gtgcccaggc agagctgggt tgggcatgag gtcctggcat 1500 ctttcagcac tgacaaggac atgttagcag gctggccttt agtggcacct tggcagtggg 1560 gctggggagt tgagagccat ggagtagagg atgctgggaa ggccatcaag ggaagaggca 1620 gcagggattt ccagccaggc aaggatctca ggaccagcat gtgcttgcca accctggaag 1680 agaagtagca tgaagtttca accatgttat agcccacttc ttacacaggg cgtcctgcag 1740 ggcaagctct gccacagtct ctgcccagtg agtcccattc cggggccctc ttcgcctttc 1800 ttggccctgt gaactcctgg ctttggggtc ctcacgcatt cctccctctc ctggatagtc 1860 acctggcctt gggcctctca aggctgcaga ggggacatcc aaccagggat gggtgacaga 1920 gctgccagtc tgctcacgcc ataccagtat tcagtcttcc ttcttcctgg cagtgcttgg 1980 gaaccctgca tttctgtgag ggagaggagg ctgggttaat gacttcaaaa tataaagcca 2040 ctggaagagg tggggaaggg aagatgggaa agcttgtcat cagaggagcc caactcccaa 2100 acctgactgt gtgcctggga tcgagcttgg ggctccagat gctaggtatt cactgtgata 2160 ccgggcttca ttctttgttg ttgttgttgt tgttttgaga cacagtcaaa ctaagttgcc 2220 ctggcaggtc ttgaacttgc aatcctcttg cctctgccag ctgaatagct gggattacag 2280 atttatggcc ataaggaaaa ccttgccaaa ggtgctagcc tcaggagcga aaagacatgc 2340 tagaccacgc caccacccca ccctaccccc gctgcccctg ctctactcaa ggttccccct 2400 ctccccttac tcctctccct cccatcttct tcataatgaa tgcttaccaa gttccagatg 2460 ctaggcacgt gctctgccac taagccatga ttgccaaccc cctttgatgt ctttgtataa 2520 cctagagatt ctggaaatac aagaccaata agcttgccca gcacagcata ctgtgtcttg 2580 tgtagctaag ggtaggtagc catgaacttc tgagccacag tctcagccct gttatgcttt 2640 tgtatggcgg gtcgcccagc aggctacttt acactagtat cattgcaaca tgtgacactg 2700 gtagctgtga tgtcattatc gaaccaggat tctgcagctc catggcacca tcttaacagc 2760 agggaccagt gatgacgtac actttccatt atctaaatac tatgtgtgat gtgtgatggt 2820 gcatgccttt aacctgtgag gtcaacagag aaactccagg aaatgagagt agataaaagg 2880 gcattcattc atttactcat tcatgcatca ggtctcagtc tagcccagca gaactctgta 2940 gctcaaacta gcattgaatt taaaaataga ttcccgcctc attttttttt tttttttttt 3000 tttttttttt ttttttttgg tgctagggtt acaggtctgt aatgtcatgt cctggctcct 3060 tgctagcatt tgggtgtttt attgctgttt gtcgagtaca gtttttgcta ccctgcttta 3120 cctgagcagg ttcttccaga tgcatgcatg aaacacacac acacacacac acacaccaca 3180 cacacactaa tttattttca acctgcctta ttgactcaat tgctaggctc ttctaatctc 3240 ccatagctag tgtgcccttc ccaatactct tagctcagca tctcttaatc tgcccttaat 3300 ttagctgcat ttttaatctt ctgcctgggg aagtggccta tggccactcc gcccgagatc 3360 tcacatggct ggtcaccttt tctccctctg aagcatggcg agatctcttt tcctctttct 3420 gcatctctta gcctgcctgt ggggacctga aagtcctgct ttttttcctt ctgcccagca 3480 attggcccct ggcatcttta tttatcaatc aagaaccaat tggggaacat gaccttagca 3540 gcagcaccac tccctgcagc tgtttatttt gtttatttgt ttgtttgttt ttaagggaaa 3600 gcaagaaaag tttattggat agagtaacag ctactggaag taatacttgt ttatcatagg 3660 acttttaaaa aatatttatt tcatgcgtgt gaccattctg cctgcttgta tgtctgtggg 3720 catcacatgc atgcagtagc tgtagagaca aagaaggcac cggattcctt agaaatggag 3780 ttatcgatgg ctgtgaactg ctgttcgggt gctgggaact aaacctgggt cttctgcaag 3840 agcattgagt tttgttttgt tttgtttgtt tgtttttcga gacagggttt ctctgtgtag 3900 ccctggctgt cctggaactc actctgtaga ccaggctggc ctcgaactca gaaatccgcc 3960 tgcctctccc tcccgagtgc tgggattaaa ggtgtgcgcc accacgcccg gctacattga 4020 gtattcttag ccactgaacc atctctccag cctctgtttt ggggtgtttg tttgagacag 4080 aatcaaaagg ctggtctaaa gtacatattg tagctaaaag atggcttcca actcctgcct 4140 tgcctccaga gtgttagggt gtgaccttta aatgacctat taaagaaacc ccaacaggtg 4200 tagagtacac ctgtgatccc agctcttagg aggttggaca gatggataaa gaggtccagg 4260 tgtcccggac tacatagaga gaccctatct caaaagagag gcgaagactt aggttttgag 4320 agtgggcctg aggtctctct tcaaaagttt tatagaaaga tgtctctgtt ccctgtctat 4380 gaacacggat ggcctgagca cctgtctctt cacaggatca gagtgtcccc cacctgaaga 4440 gggctgattg ggtcccaagc tatgctcctg agttgagtgc ctgcagccag tctgaggaac 4500 tccatggaga aaggactcgc tttgcctcag gatttccggg accttgtaca cagcctaaag 4560 attcgaggca gatacgtctt gttcctggca tttgtggtca tagtttttat cttcattgaa 4620 aaggaaaata aaatcatatc caggtaagga actcaaccac aggtcccctt tatccaaggt 4680 gaggtcagag gtgacactag ggtttttggg ggaatcaaga agtgcatccc ttctacaagc 4740 ggccgtcaga cagcccctgt gtcttaggct gaggtcatgt gcacagggtg cagactttgg 4800 cagcccaggc tggcaccccc atactggccc ttctcaactg caagcgctta ggcaaaacac 4860 atccctttgt tgaggtgggc ctttctaacc agtgactagc agtgggcctg tcttgaggaa 4920 aaggttaatg tggggggctg gagagatggc tcagtggtta agagcactga ctgctcttcc 4980 aaaggtcctg agttcaattc ccagcaacca cacggtggct cacaaccatc tgtaatggga 5040 tctgatgccc tcttttggtg tgtctgaaga cagctacagt gtactcgtat agataaaata 5100 aataaataaa taaatctttt tttaaaagag agagagaagg taaatgcgga aatgtaaacc 5160 acattttgcc catggcctgc cacatggctg aagcttggta cttgctggca tgactatttc 5220 accttctgtc ctagcgcccc ttagcagtac ttcccctttg caagtcttga tgtcatgagt 5280 ggaggtgagc ccatgggaag caaggttctg gtatggccac tctggtgggt gggaccatca 5340 tgggtaggta ccagatggtt tatctttcaa ctctaaggga gtgagcctca ggtaggctac 5400 atactccttg agttggcagg gtactgctgt gtggggtgga cctgctagac acagaaccat 5460 ttttcaactc agatctccca gatgcatagc cccacataac atcctcagcc aaagagggta 5520 ggttaaggac tgccaacgaa tcagctcatg cctgcttcac accatgtaac tctcctgaaa 5580 gttgctactg acttgctcca aaccagccag aagtgtcaga gggtaaagtg cccgagttct 5640 ttagtgaagg tgagcctctg tgtagccatc actagtcact tagcttctca ccctgaatca 5700 ctcctgggtt cttgccaaag aaaccacact cgaaccttag cctctagacc cagctaagac 5760 tgcttatcct agtacaggag atggcctccc aaatcagtca ccgaccttgt cctttgtaaa 5820 tcccctccca gggtctccga caagctgaag cagatccctc attttgtggc agatgccaac 5880 agcactgacc cagccctgct cttatcggag aatgcatctc tcttgtccct gagcgagttg 5940 gattccacct tttcccatct gcggagccgc ctgcacaacc tgagcctgca gctgggcgtg 6000 gagccagcaa tggagagcca ggaggctggg gcagagaagc catcccagca ggctggagca 6060 gggacccggc gccacgtgct tctcatggcc accacccgca cgggttcctc gttcgtgggc 6120 gagttcttca accagcaggg caatatcttc tacctcttcg agccactgtg gcacatcgag 6180 cgcaccgtgt tcttccagca gcgaggcgcc agcgcggctg gttcagcctt ggtctaccgt 6240 gatgtcctca agcagttgtt gctatgcgac ctgtatgtgc tggagccctt catcagccct 6300 ccgcccgagg accacttgac tcagttcctg ttccgccggg gatccagccg ttcactctgc 6360 gaggatccgg tgtgcacacc cttcgtcaag aaggtctttg agaagtacca ctgcaggaac 6420 cgtcgctgcg ggccactcaa cgtgaccttg gcgggcgagg cctgccgccg caaggaccac 6480 gtggccctca aggctgtgcg catccgtcag ctggagttcc tgcagccgct agttgaggac 6540 ccgaggttgg atctacgagt cattcagctg gtgcgcgacc cccgggccgt gctggcttca 6600 cgcatagtgg cctttgcggg caagtatgag aactggaaga agtggctgtc cgaggggcag 6660 gaccagctga gcgaggatga ggtgcagcga ttgcggggca actgtgagag catccgcctg 6720 tctgcagagc tgggcttgcg gcagccagcc tggctgcgcg gtcgttacat gctggtgcgc 6780 tatgaggatg tggcacgcag gccactgcag aaggcccgag agatgtacag ctttgcgggc 6840 atccccttga ccccgcaggt ggaggactgg atccagaaga acacgcaggc gacacgcgac 6900 agcagcgatg tctactccac tcagaaaaac tcttctgagc agtttgagaa gtggcgcttc 6960 agcatgcctt tcaagctggc acaggtggta caggctgcct gtggcccgac catgcacctc 7020 tttggctaca agttggccag ggatgccgcc tcactcacca accgctccat cagcctgctg 7080 gaggagcggg gcaccttctg ggtcacgtag tgggggatgt ctgggaccct tggaactcct 7140 tcttgtgaaa ggctggccct gcttccctca cacccagcct ggcagtgaga catagccctg 7200 gcagaaagtc aaaatgggga gcgatgatgg gaacatagcc cctggctgta gcggtagggc 7260 cccctgccag ctagactccc cagagcagct acagctaggg ccttgggctc ctctgaggac 7320 accctgtctc cttagtggta ctggtcataa ggtgtcctca ccctatgacc tgcagtgtcc 7380 cgagcaggtc aaggtaggtt cctgtgtgtg gacacacctc cctagctctt tctcacacag 7440 tctacacgaa gcctgtaaag gcctgtaggt tgtgtgggct ggagtccaag tatttaacaa 7500 ccagaagggg tgtagaccct ctgcagcctc tcagacctcc tactgtatta agtgttaacc 7560 tcttccgctc tgagtcagag aagctgggat ctggctgagt cctgggaagg aggaggacag 7620 cctagggtga ggaaggggac ctttgaagct cctcagggaa cagtggctgt gtaccagctc 7680 atagaaaatg gtttgatcag ctgttctagt cactcatgag tatcaatcag cctgtgtaga 7740 gcaagacaca caaagtgcat tgaaaacaga caaggccagg ggtgtggctc agcggtaaag 7800 cccttgcctc tctcatgccc agggccctag gtgtgattct tagcactata aatataaggg 7860 aaaataagcc atacatacgt gtgcagtaca gagagagaca gaaaagcgta ataaacattc 7920 ccccctctca taagcacacg ctctgcctct gtctctgtct ctgtctctct ctgtctctgt 7980 ctctctctgt ctctctctct cac 8003 //