Dbfetch
LOCUS NM_169964 3004 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG31343), mRNA. ACCESSION NM_169964 VERSION NM_169964.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3004) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3004) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3004) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3004) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3004) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3004) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3004) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3004) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3004) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3004) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3004) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3004) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3004) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3004) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3004) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3004) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3004) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_169964.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3004 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3004 /gene="CG31343" /locus_tag="Dmel_CG31343" /gene_synonym="anon-WO0140519.86; BEST:GH20248; CG5839; Dmel\CG31343" /map="93F8-93F8" /db_xref="FLYBASE:FBgn0051343" /db_xref="GeneID:326133" CDS 40..2925 /gene="CG31343" /locus_tag="Dmel_CG31343" /gene_synonym="anon-WO0140519.86; BEST:GH20248; CG5839; Dmel\CG31343" /note="CG31343 gene product from transcript CG31343-RA; CG31343-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_732652.1" /db_xref="FLYBASE:FBpp0083524" /db_xref="GeneID:326133" /db_xref="FLYBASE:FBgn0051343" /translation="MARWLLNSFSLILLLAVCSLQARLILPLSLDDGQLETKGAALFA TSRVDDNSAGNYRLPNTTEPESYNVELWTNVHNGDTEFNGTVNIDIRVLNETSNITLH YRQTSNFEATIISRDVATPTAIPLTVTPELQREFLVLTQTTAGEAFGANTNWTITINY TGIHRSDMGGFYISSYTDDDGEQHFLATTQFESTNARHAFPCYDEPARRANFTITIHH DPSYTAISNMPVNTAATSSGVTAFQTTPKMSTYLVAFIVSDFESTTGELNGIRQRVFS RKGKQDQQEWALWSGLLVESSLASYFGVPFALPKLDQAGIPDFSAGAMENWGLATYRE QYMWWNKQNSTINLKTNIANIIGHEYAHMWFGDLVSIKWWTYLWLKEGFATLFSYESN DIAFPLWDTYQIFHVNDYNSALLNDALASAVPMTHYVQTPSEISNRYNTFSYAKPASV LYMFKNAWTDKVFRTGLNKYLTKNQYTSCDEWDLFASFQESADELGFTLPASVDDIFS SWSHQAGYPLLTVTRNYNAGTITITQKRYVANKTDTNSATWYVPLNFATANKYDYRDT SATHYLLNVTETVISDVEASSDDWIIVNIQNSGYYRTLYDTQNYGLITAALKSQPWRF HPRNRAQLLYDTYIFVSTDRLSHSILLELLGYLTNEQQYAPWSTANTILTVYDRYLRG DDSYYNFQDFVKRLIDPIFDKIGVNEIPGEHYLNNYLRIVLVSLACQVGSDDCYNQSA NKLSEYLYNGTAIEATLKTQAYCAGLRSTTNEIYSRVQSDLLSSSDSTDRSLFISSLG CSGSTSQLLDFLRLSLDTNNSLSYSERTSLLNSAYSRSEIGLTASLEFLESNWEAYAN LSDSAKPLDAALRGIATYVVSEKQKTRLNALVDVVEADGPSYINDDLSTTIDSRITSN FAWLEVNRDPVLNWIEDSLKENGSPSLTSSITTILVSAMALLLFRLY" ORIGIN 1 gccgctcaat aacaaagtgt cttttaccga gcagccaaca tggcacggtg gctgcttaac 61 tcgttttcgc tgatcctgct cctggcagtg tgcagcctac aggcgcgcct gatccttccc 121 ttatccctgg acgatggaca gctggagacc aagggagcag ccctctttgc cacctcccgc 181 gtggatgata atagtgccgg caattaccga ctgccaaata caacggaacc ggagtcctac 241 aacgtggaac tctggaccaa tgtccataat ggcgataccg aattcaatgg caccgtcaat 301 atcgatatcc gggttttgaa cgagacatcg aatattacgc ttcactatcg ccagacgtcg 361 aattttgaag cgacgattat cagccgggat gtggccacgc ccacggcaat tccactcact 421 gtaacccccg agttgcagcg cgaattcctc gtccttacgc agaccaccgc tggtgaggca 481 tttggagcca acaccaactg gaccatcacc atcaactaca ctggcatcca ccgatctgat 541 atgggcggtt tctatatctc cagttatacg gacgatgatg gcgaacagca cttcttggcc 601 accacgcaat tcgagagcac aaacgcccgt cacgcgtttc cctgttacga tgagcctgcc 661 cgtagagcta actttacgat taccatccac catgatccct cctacactgc catcagcaat 721 atgccagtaa acaccgctgc caccagctcg ggagtcactg ctttccagac gacgccaaag 781 atgtccacct acctggtggc cttcatcgtc tccgattttg agtccaccac cggagaactg 841 aatggcatcc gccagcgggt tttctcgcgc aagggaaagc aggatcagca ggaatgggcc 901 ctttggtccg gattgcttgt ggagtccagt ctggctagct actttggggt tcccttcgcc 961 ctgcccaagc tagatcaagc tggaataccg gacttctctg ccggtgccat ggagaactgg 1021 ggtctggcca cctatcgtga gcagtacatg tggtggaaca agcagaactc cacgatcaac 1081 ctgaagacga acattgccaa tattattgga cacgagtacg cgcacatgtg gttcggcgat 1141 ttggtatcta tcaaatggtg gacctatctg tggctcaagg agggctttgc tactctcttc 1201 tcgtacgaat cgaacgacat tgctttccca ctgtgggaca cctatcagat cttccacgtg 1261 aacgactaca acagcgctct gcttaacgac gccctggcct cggccgttcc catgacgcac 1321 tacgttcaga caccatcgga gatctccaac aggtataaca ccttctcgta cgccaagccc 1381 gccagtgttc tgtacatgtt caagaacgct tggacggaca aggtattccg cactggattg 1441 aacaaatacc tgaccaagaa ccaatataca tcttgcgacg aatgggatct atttgcgtcc 1501 ttccaggaat cggccgacga gctgggcttt acgctgcccg ccagtgtgga cgacatcttc 1561 agtagctggt cccaccaggc tggttatccc ctgctcacag tgacccgtaa ttacaatgcc 1621 ggcactataa cgatcaccca gaagcgttat gtggcgaaca aaactgatac aaatagcgca 1681 acttggtatg tgccacttaa ctttgccact gccaacaagt acgattatcg tgacacgagc 1741 gccacacatt acttgctaaa tgtgacggag accgtgatct cagatgtcga ggcttccagc 1801 gatgactgga taatcgtgaa tatccagaac tccggctatt accgcaccct gtacgatacg 1861 cagaactatg gtctaattac ggcagctctg aagtctcagc cctggaggtt ccatcctcgt 1921 aacagggcac aactgctgta cgatacgtac atctttgtca gcaccgatcg cctgagccac 1981 agcatcctgc tggagctgct gggttacctg actaatgagc agcagtatgc tccttggtcc 2041 actgccaaca ctattctgac cgtctacgat cgttacttgc gtggcgatga ttcttactac 2101 aacttccaag atttcgtgaa gcgcctgatc gatcccatct tcgataaaat cggtgtaaac 2161 gagattcccg gcgagcatta tctgaacaac tatctgcgca tcgtgctggt cagcttggcc 2221 tgccaggtgg gatccgatga ttgctataac cagtcggcca ataaattatc cgagtaccta 2281 tacaatggca cagccattga ggccactcta aagactcaag cctactgtgc tggtctccga 2341 tcgactacca atgaaatcta tagcagagtg cagtccgatt tgctcagttc ctcagattcc 2401 accgatcgca gcctgttcat ctcctcgttg ggctgctctg gaagtacgag ccagctgctt 2461 gatttcttga gactatccct ggacaccaac aatagcttga gctactcgga gcgcacttcc 2521 cttctaaact cggcctattc ccgcagtgaa atcggtctta ccgctagttt ggaattcctg 2581 gagagcaact gggaggcata tgccaacctt tcagactctg caaagcccct ggatgctgcc 2641 ctgcgtggca ttgccaccta tgtggtcagt gagaagcaaa agacgaggct taacgctttg 2701 gtggatgttg tggaggctga tggaccgagt tatatcaatg atgatctgag caccaccatt 2761 gactccagaa tcacatccaa cttcgcttgg ttggaagtta atcgtgatcc agtgctcaac 2821 tggatcgagg attccttaaa agagaacggc agtccctctc tgacctcatc catcaccacg 2881 atcctggtca gtgcgatggc tctgttgcta ttcaggctat attaagataa ctcacgtggt 2941 caagtattaa acataaattc agtaaagtga cgtaaatcaa caataaagat tgtgtgctca 3001 tcat //