Dbfetch
LOCUS NM_142703 3390 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster ETHR, transcript variant A (ETHR), mRNA. ACCESSION NM_142703 VERSION NM_142703.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3390) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3390) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3390) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3390) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3390) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3390) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3390) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3390) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3390) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3390) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3390) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3390) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3390) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3390) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3390) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3390) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3390) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3390) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jul 15, 2014 this sequence version replaced NM_142703.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3390 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3390 /gene="ETHR" /locus_tag="Dmel_CG5911" /gene_synonym="anon-WO0170980.37; anon-WO0170980.38; CG5911; CG5911a; CG5911b; Dm ETHRa; Dmel\CG5911; ETH R; ETH-R" /map="93D1-93D2" /db_xref="FLYBASE:FBgn0038874" /db_xref="GeneID:42523" CDS 1168..2583 /gene="ETHR" /locus_tag="Dmel_CG5911" /gene_synonym="anon-WO0170980.37; anon-WO0170980.38; CG5911; CG5911a; CG5911b; Dm ETHRa; Dmel\CG5911; ETH R; ETH-R" /note="CG5911 gene product from transcript CG5911-RA; CG5911-PA; ETHR-PA; Ecdysis-triggering hormone receptor; ecdysis triggering hormone receptor; ETH receptor" /codon_start=1 /product="ETHR, isoform A" /protein_id="NP_650960.2" /db_xref="FLYBASE:FBpp0083456" /db_xref="GeneID:42523" /db_xref="FLYBASE:FBgn0038874" /translation="MLPQIPSYIRTTAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNS TNIFLTNLSIADLLVLLVCTPTVLVEVNTRPETWVLGHEMCKAVPFVELTVAHASVLT ILAISFERYYAICEPLKAGYVCTKGRAILICVLAWGIAALFTSPILWVAEYKLAEYID GSSVAVCLTQAISDWTLAFFLMTISVFFVVPFVTLVVLYGIIARNLVSNRAAMLRARP TKPELSLKARKQVVLMLGAVVLSFFVCLLPFRVLTLWIILSTDQTLHDLGLVRYYSLL YFCRIMLYLNSAMNPILYNLMSTKFRRGFKRLCQDAGRLLLELVTLGRRKEDSSRGRR GTLSLGMGTNTNTNTNSSNATGATSSSILSRSSNRRCSEDISRTRLKIEMQMPCGSDL EAMAMLQHSTLGKGIARRVSDSRLMPLRNHQPRRHKPQISFDEESLEENKRSEAKIPT KCREKLPGIAREIVNLTENTL" ORIGIN 1 ggaaaacctg acgtcgagcg gttggccgga tcatttgccc ctttgcgcgt cgaaagaaag 61 tttcggattc gaaatttttg gaaaaataga actcacgcgt ctggtgtgac aggtgcatct 121 tggcatatat acgatatatt atcgtctttg tgggtgatgt ctctggttct ccaagcgaac 181 ggactgcact tctccgctgc cattagtgtc aacgccgatg tcagctggct gcggttgtcg 241 gcggcgtcgt gttaatgctt ttaattacat gcaaaacata aaaaagtatt tcgttaagtg 301 ttgccgtgaa gtttgacatc ggaaattaat gcacttgcca ccgcaggcat ttcgcggggg 361 ccaacgcacc agttccacat tcccgatcta tattccccgc cgatcttgag tttccgccac 421 tgccacttga gagcgcggac gacaaccgca aagctccact gattgatttg tttaatgcgc 481 ccggatccgg cgatagcgga gtatccgtga atcccttgga caacttaatt tcattagcgc 541 gtatttaagt gtgagcataa acttgccggg cgggcaatta catcggattt ggccaggaca 601 ccctctcgta actcacttaa ttgaacagcg ggcggtggcg gcaacagcca gcccatccca 661 aaatccgttc cccgagcccc gaggatgttg tccctgtgat ttccattgcg agacttacgc 721 tcccagtgcc gcaggacgag gacgacgagg acacagagga cattgctgag gggcagccac 781 ggcgtcgctg tggccaggac tgggcagctt ccaaggctga ccagcatttg cgtaggcccg 841 aggatctgcc tgtggctcct gctcctggct ctgcttctgc tccagaccca agatgcacta 901 cccgcagcag cagcagcagc agcaacatct agcgcaacag cagccacgtc gccgcagcag 961 gctggggtat cccgtggctc tcctagtggc ggccatggcc cacaccacac acctcatcgt 1021 tttccagccg caggacttga ccaccaggac aactccaccg cagcagccgc aacagcagca 1081 acaacatctg atgctgaagc cacagaacca acagcagccg cagccacttc aacatcaagc 1141 tccaaggacg atggcgatgc tgagcagatg ctgccacaga ttccatcgta tatccgcaca 1201 accgccatgt tcttctgcat agtcatcatg ctgctgggtg tggtgggcaa tgtgatggtg 1261 cccatcgtga ttgtgaagac gaaggatatg cgcaactcga caaacatctt cctaaccaac 1321 ctgagcattg cggacctgct ggtgctgctc gtctgcacgc ccaccgtcct cgtggaggtc 1381 aacactcgcc cggagacctg ggtacttggc cacgagatgt gcaaggctgt gccgttcgtg 1441 gagctcacgg tggcccacgc cagtgtgctg accatcttgg ccatctcgtt cgagcgctat 1501 tacgcaatct gcgagccatt aaaggccggc tacgtctgca ccaaggggcg ggccatcctc 1561 atctgcgtcc tggcctgggg cattgctgcg ctctttacga gccccattct gtgggtggcc 1621 gagtacaagc tggccgagta cattgatgga tcgtcggtgg ccgtgtgcct gacccaggcc 1681 atcagcgact ggacgctggc cttcttcctg atgaccatct cggtgttctt cgtggtgccg 1741 ttcgtgaccc tggtggtgct gtacggcatc atcgcccgga atctggtctc caacagggcg 1801 gccatgctgc gcgcccgtcc cacgaagccg gagcttagtc tgaaggcccg caagcaggtg 1861 gtcctaatgc tcggcgccgt tgtgctgtcc ttcttcgtct gcctgctgcc cttccgcgtc 1921 ctcaccctgt ggatcatcct cagcacggac caaacactgc acgatctggg attggtgcgc 1981 tactacagct tgctgtactt ctgtaggatc atgttgtacc tcaactcggc catgaatccg 2041 attctttaca acctgatgtc gaccaagttt cgaaggggtt tcaagcggct ttgtcaggac 2101 gcagggcgat tactgctgga attggtgaca ttgggaagaa ggaaggaaga ctcttctcgc 2161 gggcgcagag gtaccttgtc actgggcatg ggcaccaata cgaacacgaa taccaactcc 2221 tcaaatgcca caggagccac gagctccagc attctctcga gaagctccaa tcgcaggtgc 2281 agcgaggata tcagtcgcac ccgccttaag atcgagatgc agatgccatg tggcagcgac 2341 ctggaggcca tggccatgct gcagcattcc accttgggca agggaattgc caggcgagtg 2401 agtgatagcc gtctcatgcc tctgagaaat catcaaccac gacgccacaa gccgcaaata 2461 agtttcgacg aggagtcact ggaggagaat aagcgtagtg aagcgaaaat cccaacaaaa 2521 tgtcgagaaa agcttcctgg aatagcaaga gaaatagtaa atctgaccga aaataccctc 2581 taagcgagat gggcgtgaaa aatcgccttt aacccgttta cacactcgct tcacttggct 2641 ggaatgtgcc gatgacgctg atcccgatcc cgattcctat tcccgctcct ggtaaacaca 2701 aatcgcttcc tgaacgcttt tggcagccat aatcgatttc agtcacccgc tgacagctgc 2761 cgagaatccc gaatcgtagt tgggctgccg ccttggacat ttccgtacca aaaacaatca 2821 atttttcggg ctattaaact cgaatgaatg tgccaaagat aaataacagc aacgacagcc 2881 gaacagcact aaaactacca ctactggtca gggttaggag tccagatatc gactggcagt 2941 aaggggtaag ccattaggtg gccttcgagg agcggagctg gcaaatggaa atggcttaat 3001 atgcgtttgg gcgaaccatc aggtcggcgg ataaacatga tttaggtgta ttgaaatagt 3061 ttccgtacgc cggaccgtac aaaatggccg ccattacacg ggcggccatc accggaagtc 3121 gaaaaaactg ttgcctactt gccggcagct caaataaaaa gcttagctca atatgcacac 3181 aatgtccaca tgtaaacaca gctgtacata cacatacata cccccacacg cacacatagc 3241 caaatattaa tatttatatt tgtacgaaca tatttatata cacatattta catatatata 3301 gtctgcttat aaatatgtac aaggaaccac acgcacacac tcacacacac acgagagttt 3361 gtaagtaaat aaatttttta tgacaactca //