Dbfetch
LOCUS NM_123302 1807 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Calcium/lipid-binding (CaLB) phosphatase (PTEN1), mRNA. ACCESSION NM_123302 VERSION NM_123302.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1807) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 1807) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1807) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1807) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_123302.3. FEATURES Location/Qualifiers source 1..1807 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..1807 /gene="PTEN1" /locus_tag="AT5G39400" /gene_synonym="ATPTEN1; MUL8.8; MUL8_8; Phosphatase and TENsin homolog deleted on chromosome ten 1" /db_xref="Araport:AT5G39400" /db_xref="GeneID:833936" /db_xref="TAIR:AT5G39400" CDS 137..1375 /gene="PTEN1" /locus_tag="AT5G39400" /gene_synonym="ATPTEN1; MUL8.8; MUL8_8; Phosphatase and TENsin homolog deleted on chromosome ten 1" /inference="Similar to RNA sequence, EST:INSD:EH939373.1,INSD:AU238968.1,INSD:DR378830.1, INSD:AU230223.1" /inference="similar to RNA sequence, mRNA:INSD:BX829664.1,INSD:BX829512.1,INSD:BT005560.1, INSD:AJ490172.1,INSD:AK118115.1" /note="PTEN1; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Phosphatase tensin type (InterPro:IPR014019), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: PTEN 2 (TAIR:AT3G19420.1); Has 1458 Blast hits to 1454 proteins in 210 species: Archae - 8; Bacteria - 27; Metazoa - 855; Fungi - 236; Plants - 75; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink)." /codon_start=1 /product="Calcium/lipid-binding (CaLB) phosphatase" /protein_id="NP_198756.2" /db_xref="GeneID:833936" /db_xref="TAIR:AT5G39400" /db_xref="Araport:AT5G39400" /translation="MGLKLSRGPVKEKSPLEFTRVHILTYFTTNSYLRNLVSKKRRRL IIGGYDLDMSYISDKLLAMSFPAERMRAVYRNPLWQVKSVLDMRHPDHYKVYNLCIEE SYDPDNFYGRVERFPFDDNHVPSLKMIQLFCESVHSWLSLDPKNIAVVHCMAGKGRTG LMVSAYLVYGGMSAEEALEMYASRRTTNNNGVSIPSQRRYVKYWSDLLSFSKKGPPEV KLPQEHSRELLRIRLYDTANVDSVFFVVSELQEVPNEMYRPSVELARGCCRQFKKGYC RSSSPRYYISHVNCDSEEDEEVTDGEEPHLVVQMDTESSIIDEKTCLDFYFDKPVRVS GDIRITFYQKMIGSRLFYTCFNTAFITNGLLQFSIGELDKVGGNGRSISGPDFSLELL FGPACSKFGKFLSRDDLSLS" ORIGIN 1 cccattttct ccaaaaaaag ttgaaatttt tcggttttgt attacctcgc gacatcttct 61 tccttctcgg gttcccaatt ccctcaattt gggaacctga aaatctcttc ctcaacttca 121 tgatcaattc ttcagaatgg gtctcaagct ctcacgaggg cctgtaaaag aaaaatcacc 181 tttggaattc acaagggttc acattctgac ttacttcacc acaaattctt acctacgtaa 241 cttggtgtcc aagaaacgaa gacggttaat catcggtgga tatgatctcg acatgtctta 301 catctccgac aaattattgg caatgtcttt tccagctgaa cgaatgagag cagtctatag 361 aaaccctctt tggcaagtca agtccgtgct cgatatgcga catcctgatc attacaaggt 421 ctataatcta tgtatagagg aatcttatga tccagacaac ttttatggcc gcgtggagcg 481 atttccgttt gatgacaatc atgttccatc cctcaaaatg atccaacttt tctgtgaaag 541 tgttcattct tggctctcat tagatcccaa gaacatcgcg gttgttcatt gcatggcagg 601 aaaaggtaga acagggctaa tggtatcggc gtaccttgtt tacggtggca tgtcagctga 661 agaagctctt gagatgtatg caagcagaag aacaacaaac aataatggag tctcaatacc 721 aagccaacgt cgttatgtga agtactggtc agatttactt tcgttcagta aaaaaggacc 781 tcccgaggtt aaattaccgc aagaacatag cagagagttg ttgcgaatta gactttatga 841 tacagctaac gttgattccg tcttctttgt ggtttcagaa cttcaggagg ttccaaatga 901 gatgtatcga ccgtctgtag aacttgcaag aggttgttgt agacaattca agaaagggta 961 ttgtagaagt tcgagtccac ggtattatat atctcatgtg aactgtgatt cagaagaaga 1021 tgaggaagta acagacggag aagagccaca tcttgttgtt cagatggata cagagagttc 1081 cattatcgac gaaaaaactt gtcttgattt ctactttgac aaacctgtga gagttagtgg 1141 tgacatacgc atcacattct accagaaaat gattggaagc cgcctttttt atacttgctt 1201 caacacagct tttataacca atggcttact tcagttttcc ataggagagc tagataaagt 1261 tggtggtaac ggaagatcga tatctggtcc tgattttagc ttggagttac tctttggccc 1321 agcttgttcg aaattcggaa agtttctttc ccgcgatgac ctttctctct cttgaggcct 1381 cattttcagc tcattggatt tcaacacttg agtttttaaa cggttctgtt tcatcactca 1441 gccacaaaag aggcctgact agctcagctg agacctgcaa aacacttcaa tggctgataa 1501 cagtgtttag catgtacaaa tgcagaggca aatgggagat catcaaacaa tgtcagcaaa 1561 cgaaccactt tctcaacaat gttttgtttt gtttttgtag cagggactgc aattttggta 1621 aatgatagac agtaataaga tttatgggat tctcttacca tccatttttt tcattaagat 1681 ggtctgtttc cagttttaag aaccacattc tctgttttga gtacatacat atctccatag 1741 caaacgtaaa ggaaacagtt ttattattat tggaatacaa cttaccatca aactgtcttc 1801 aatgtca //