Dbfetch
LOCUS NM_078556 3300 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster IGF-II mRNA-binding protein (Imp), transcript variant A, mRNA. ACCESSION NM_078556 VERSION NM_078556.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3300) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3300) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3300) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3300) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3300) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3300) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3300) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3300) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3300) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3300) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3300) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3300) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3300) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3300) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3300) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3300) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3300) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3300) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_078556.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3300 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3300 /gene="Imp" /locus_tag="Dmel_CG1691" /gene_synonym="anon-EST:fe2B3; anon-WO0140519.39; cg1691; CG1691; dIMP; Dmel\CG1691; FGC026A04; IGF-II; IGF2BP1; imp; IMP; IMP-1; l(1)G0072; mre11; MRE11; ORE-9" /note="IGF-II mRNA-binding protein" /map="9F1-9F4" /db_xref="FLYBASE:FBgn0285926" /db_xref="GeneID:32009" CDS 528..2228 /gene="Imp" /locus_tag="Dmel_CG1691" /gene_synonym="anon-EST:fe2B3; anon-WO0140519.39; cg1691; CG1691; dIMP; Dmel\CG1691; FGC026A04; IGF-II; IGF2BP1; imp; IMP; IMP-1; l(1)G0072; mre11; MRE11; ORE-9" /note="CG1691 gene product from transcript CG1691-RA; CG1691-PA; Imp-PA; Insulin-like growth factor 2 mRNA binding protein 1; IGF-II messenger RNA binding protein; anon-fast-evolving-2B3; IGF2BP; insulin-like growth factor II; mRNA-like ncRNA in embryogenesis 11; KH-domain protein" /codon_start=1 /product="IGF-II mRNA-binding protein, isoform A" /protein_id="NP_511111.1" /db_xref="FLYBASE:FBpp0073276" /db_xref="GeneID:32009" /db_xref="FLYBASE:FBgn0285926" /translation="MHSNNNSSRLNNNISNNYYQQKQSLIRYLDRAAVGLNGVEFEGS KLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRT ITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILEVMQQEAISTNKGEICL KILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGLIENMS RAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVFNTSMPFPSCQSF AMSKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPL DADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVELLVASSQ VGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQRRI RAMMLSTNPPPITKKQKAAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHH QPVSSASSSSTPPAHHQQQASTAATSHQLQQQQPSPPPPGNATAAAAQQQQQLASSQQ " ORIGIN 1 gctcagtatt taaatactct ctgcattttg cggtcatctt attcggaaat acgcgcggcg 61 tagttgcaca aaaccaacaa gaacaacagc gacggaaaag agcaacaact aaagcaataa 121 ctacaacaac acacggctaa tttcacaaat caaaaaactg aaacggcaaa aattataaaa 181 tattataagt gcgcgtgagt gtttgagtgt gcgttgtttc agttatattt ttttttattt 241 tcccctcaca ccttgctctt ctgtgcgcat aaaattcaaa aagtattgaa aagttgtaaa 301 aaaaaaacta gcgccttgcg tttcgctgcg ctttttttgt tgctcatacg catttggcat 361 ttaaagacca atagcaacaa caactacagt gagtgtgaag aagaaacgaa aatagatcgc 421 ctttttagag ataagagtaa agttttgctt ttgcactgca aacacaaaaa acaacgacag 481 taagaaagaa actcaacagt cggccagctc aaacaatcaa acacaaaatg cacagcaaca 541 ataatagcag cagactcaac aacaacataa gcaacaatta ttatcaacaa aaacaatcgc 601 ttatacgcta tttggatcga gctgctgttg gtctgaacgg tgtcgagttc gagggcagca 661 agctgcatgc cgagcagctg gacaagaacc agcggcgtag ccagcgtaac cagcgcaatc 721 cgtatccggg tatgcccggt cccggacgcc aggcggactt tccgctgcgc attcttgtgc 781 agagcgaaat ggtgggcgcc atcattggtc gacagggcag caccatcagg acgatcacac 841 aacagagccg tgctcgcgtc gacgtccatc gtaaggagaa tgttggatcg ctggagaaat 901 cgattacgat ctatggcaat ccggagaact gcaccaacgc ctgtaagcgc atcctggaag 961 ttatgcagca ggaggccatc tctacgaata agggtgaaat ttgcctcaaa atactcgccc 1021 acaacaattt gattggacga atcattggca agtcgggcaa taccattaaa cggatcatgc 1081 aggacaccga tacgaagatc actgtcagct ctatcaacga catcaacagc ttcaatttgg 1141 agcgaatcat tacggtcaag ggattaattg agaacatgtc gcgtgctgag aaccaaatta 1201 gcaccaagct gcgccagagc tacgagaacg atctgcaggc gatggcgccg cagagcctca 1261 tgttccccgg tctccatccg atggcaatga tgtcgacacc gggcaacggc atggtcttca 1321 atacgagcat gccgttcccc tcgtgtcaaa gctttgccat gtccaagact ccggctagtg 1381 tggtgccacc ggtcttcccc aatgacctac aggaaaccac ctatctctac atacccaaca 1441 acgctgtcgg cgccattatc ggcaccaggg gctcgcatat ccgaagcata atgcgcttct 1501 cgaacgcatc ccttaaaata gcccccctcg acgccgacaa gccgctggac caacaaacgg 1561 agcgcaaggt gacgattgtt ggcacaccgg agggtcagtg gaaggcgcag tacatgatct 1621 tcgagaagat gcgcgaagaa ggcttcatgt gtggcacgga cgatgtgcgc ctcacggttg 1681 agttgcttgt ggccagctct caggtgggcc gtatcattgg caagggtggc caaaatgtgc 1741 gagaattgca gcgcgtgacg ggcagtgtga tcaaattgcc cgaacatgcc cttgcaccgc 1801 catccggtgg agatgaagag acaccagtgc acatcatcgg actattctac agtgtacagt 1861 ctgcccagcg acgcatccga gccatgatgc tttcgacaaa tccgccgcca ataaccaaaa 1921 aacagaaagc tgccaaagaa caattgcaac aacagcaaca gagcctagcc ggagccgcgt 1981 ccagcggttc ccagcagcaa cagccacagt cgccatctca acaacaggca ctgccgccgc 2041 aattgcatca tcagcctgtg tcgtcggcgt cgtcatcgtc gacgccgcct gcacaccatc 2101 agcagcaggc gtcgacggca gcgacctcac accagctgca gcagcagcag ccatcgccgc 2161 cgccacctgg caatgcaact gcggccgcag ctcagcagca gcagcagctg gcgagctcac 2221 aacagtaagg aggaatcacc gttaaaggag agccggcgcc gcagcagcag cagcagaagc 2281 agcaaaagca gcagcagcag caacatcagc agcagcagca gcagcagcag cgaaagcgcc 2341 aaaaatagcc aaggcagggt tttctactgt tgatactacc tccacagcac acccataaga 2401 ttcaataccc caagacccaa aagcacccac cacaatttac aaccctatat aactacaagc 2461 taaccgtagg cgccaccttt gtgctggcac aggcgacggc aaaagtaagc aagcaacctg 2521 gagcagtaac ataagcaaaa ttttacgcat atagaactgt aggggaacca ccacatcaaa 2581 aagtgagctg cgtgaagagc tctactagtt catagcagtg tatttcgact ttaacaagat 2641 caacataaaa cagcagtcac acagcaagaa taacaataac ataacattct tcatttgcat 2701 actaagaaat aaagagaaaa agttaataga aagcagcgcg ctatcgttca tagaaaccac 2761 taaaaacaaa accccgccca aaaatcgaaa ctttgtgttg ttgttctgct agttgtaaac 2821 ttttgcgtca gctgagaatt cggtaccgcc taaactgttg tgaacgtttt caaggcagta 2881 ggagtaaaac cttaaatatt cataatttgt acaagtaaac catatattca acaacaacaa 2941 cacaaagagt caaagtaact aaagagaaaa ccccttaaac taacactaaa tttgattgca 3001 aaaaggggaa ataatggata atgaaggaaa gtttagtagt gtatgcgtta tatttttttt 3061 aaatatattt aactataaaa cgtttatttt taattatttt ttttaacaaa gatttagtaa 3121 gcttacattt aagtggaatg aatagaagag aagtgagcaa agcgtaagag aatgagattg 3181 agaatcaatt taaaacaaaa aaaaaataag tagggacaac catttcgttg atcccaaaac 3241 taccgagaat tacacaagaa gaaaaagtac acaagcgaaa ataagaatca agaaatattc //